Cloning, physical mapping and expression of chromosomal genes specifying degradation of the herbicide 2, 4, 5-T by Pseudomonas cepacia AC1100

UMX Sangodkar, PJ Chapman, AM Chakrabarty - Gene, 1988 - Elsevier
UMX Sangodkar, PJ Chapman, AM Chakrabarty
Gene, 1988Elsevier
A genomic library of total DNA of Pseudomonas cepacia AC1100 was constructed on a
broad-host-range cosmid vector pCP13 in Escherichia coli AC80. A 25-kb segment was
isolated from the library which complemented a Tn5-generated, 2, 4, 5-
trichlorophenoxyacetic acid-negative (2, 4, 5-T−) mutant, P. cepacia PT88. This mutation
was partially characterized and appeared to be lacking functional enzyme required for
metabolism of an intermediate of the 2, 4, 5-T pathway, recently identified as 5-chloro-1, 2, 4 …
Abstract
A genomic library of total DNA of Pseudomonas cepacia AC1100 was constructed on a broad-host-range cosmid vector pCP13 in Escherichia coli AC80. A 25-kb segment was isolated from the library which complemented a Tn5-generated, 2,4,5-trichlorophenoxyacetic acid-negative (2,4,5-T) mutant, P. cepacia PT88. This mutation was partially characterized and appeared to be lacking functional enzyme required for metabolism of an intermediate of the 2,4,5-T pathway, recently identified as 5-chloro-1,2,4-trihydroxybenzene [Chapman et al., Abstr. Soc. Environ. Toxicol. Chem. USA 8 (1987) 127]. A simple colorimetric assay was developed to detect the presence of this active enzyme in intact cells and was used to determine the expression of complementing genes. Subcloning experiments showed that a 4-kb BamHI-PstI fragment and a 290-bp PstI-EcoRI fragment, separated by 1.3-kb, were required for complementation. Both fragments are identified to be chromosomal in origin. Hybridization studies using the subcloned fragments revealed that in addition to a TnJ insertion, mutant PT88 contained an extensive chromosomal deletion accounting for its 2,4,5-T phenotype. The cloned fragments did not show homology to plasmid DNAs carrying degradative genes for toluene, naphthalene and 3-chlorobenzoate.
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