The length of telomeric G-rich strand 3′-overhang measured by oligonucleotide ligation assay

G Cimino-Reale, E Pascale, E Battiloro… - Nucleic acids …, 2001 - academic.oup.com
G Cimino-Reale, E Pascale, E Battiloro, G Starace, R Verna, E D'Ambrosio
Nucleic acids research, 2001academic.oup.com
A typical G-rich telomeric DNA strand, which runs 5′→ 3′ toward the chromosome ends,
protrudes by several nucleotides in lower eukaryotes. In human chromosomes long G-rich
3′-overhangs have been found. Apart from the standard G-rich tail, several non-canonical
terminal structures have been proposed. However, the mechanism of long-tail formation, the
presence and the role of these structures in telomere maintenance or shortening are not
completely understood. In a search for a simple method to accurately measure the 3 …
Abstract
A typical G-rich telomeric DNA strand, which runs 5′→3′ toward the chromosome ends, protrudes by several nucleotides in lower eukaryotes. In human chromosomes long G-rich 3′-overhangs have been found. Apart from the standard G-rich tail, several non-canonical terminal structures have been proposed. However, the mechanism of long-tail formation, the presence and the role of these structures in telomere maintenance or shortening are not completely understood. In a search for a simple method to accurately measure the 3′-overhang we have established a protocol based on the ligation of telomeric oligonucleotide hybridized to non-denatured DNA under stringent conditions (oligonucleotide ligation assay with telomeric repeat oligonucleotide). This method enabled us to detect a large proportion of G-rich single-stranded telomeric DNA that was as short as 24 nt. Nevertheless, we showed G-tails longer than 400 nt. In all tested cells the lengths ranging from 108 to 270 nt represented only 37% of the whole molecule population, while 56–62% were <90 nt. Our protocol provides a simple and sensitive method for measuring the length of naturally occurring unpaired repeated DNA.
Oxford University Press