Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses

G Kamer, P Argos - Nucleic acids research, 1984 - academic.oup.com
G Kamer, P Argos
Nucleic acids research, 1984academic.oup.com
Possible alignments for portions of the genomic codons in eight different plant and animal
viruses are presented: tobacco mosaic, brome mosaic, alfalfa mosaic, sindbis, foot-and-
mouth disease, polio, encephalomyocarditis, and cowpea mosaic viruses. Since in one of
the viruses (polio) the aligned sequence has been identified as an RNA-dependent
polymerase, this would imply the identification of the polymerases in the other viruses. A
conserved fourteen-residue segment consisting of an Asp-Asp sequence flanked by hydro …
Abstract
Possible alignments for portions of the genomic codons in eight different plant and animal viruses are presented: tobacco mosaic, brome mosaic, alfalfa mosaic, sindbis, foot-and-mouth disease, polio, encephalomyocarditis, and cowpea mosaic viruses. Since in one of the viruses (polio) the aligned sequence has been identified as an RNA-dependent polymerase, this would imply the identification of the polymerases in the other viruses. A conserved fourteen-residue segment consisting of an Asp-Asp sequence flanked by hydro-phobic residues has also been found in retroviral reverse transcriptases, a bacteriophage, influenza virus, cauliflower mosaic virus and hepatitis B virus, suggesting this span as a possible active site or nucleic add recognition region for the polymerases. Evolutionary implications are discussed.
Oxford University Press