Wild-type α1-antitrypsin is in the canonical inhibitory conformation

PR Elliott, JP Abrahams, DA Lomas - Journal of molecular biology, 1998 - Elsevier
PR Elliott, JP Abrahams, DA Lomas
Journal of molecular biology, 1998Elsevier
α1-Antitrypsin is the archetypal member of the serine proteinase inhibitor or serpin
superfamily. Members of the family show structural homology based on a dominant A β-
sheet and a mobile reactive centre loop. Our recent crystal structure of α1-antitrypsin
stabilized with a point mutation showed the loop to be in a canonical inhibitory conformation
in the absence of significant insertion into the A β-sheet. It could be argued that the
stabilizing mutation may induce the reactive centre loop to adopt an artificial, and …
α1-Antitrypsin is the archetypal member of the serine proteinase inhibitor or serpin superfamily. Members of the family show structural homology based on a dominant A β-sheet and a mobile reactive centre loop. Our recent crystal structure of α1-antitrypsin stabilized with a point mutation showed the loop to be in a canonical inhibitory conformation in the absence of significant insertion into the A β-sheet. It could be argued that the stabilizing mutation may induce the reactive centre loop to adopt an artificial, and unrepresentative, conformation and the finding seems to be at variance with studies assessing rates of peptide insertion into the A β-sheet and limited proteolysis of the reactive loop. Here we present a 2.9 Å structure of recombinant wild-type α1-antitrypsin with no stabilizing mutations. Again, the reactive loop is in a canonical conformation in the absence of significant insertion into the A β-sheet. A stabilizing salt bridge between P5 glutamate and arginine residue 196, 223 and 281, already identified in the mutant, provides strong evidence that this conformation is not an artefact of crystallization but represents the conformation of the circulating inhibitor in vivo. Comparison with the structure of α1-antitrypsin stabilized with the Phe51Leu mutation indicates that the increased thermal stability of the mutant results from enhanced packing of aromatic residues in the hydrophobic core of the molecule. The structure of wild-type α1-antitrypsin reveals a hydrophobic pocket between s2A and helices D and E that is filled on reactive loop insertion and the formation of biologically relevant loop-sheet polymers. This pocket may provide a target for rational drug design to prevent the formation of polymers and the associated plasma deficiency, liver cirrhosis and emphysema.
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