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Targeting the host factor HGS–viral membrane protein interaction in coronavirus infection
Xubing Long, Rongrong Chen, Rong Bai, Buyun Tian, Yu Cao, Kangying Chen, Fuyu Li, Yiliang Wang, Yongjie Tang, Qi Yang, Liping Ma, Fan Wang, Maoge Zhou, Xianjie Qiu, Yongzhi Lu, Jie Zheng, Peng Zhou, Xinwen Chen, Qian Liu, Xuepeng Wei, Yongxia Shi, Yanhong Xue, Jincun Zhao, Wei Ji, Liqiao Hu, Jinsai Shang, Tao Xu, Zonghong Li
Xubing Long, Rongrong Chen, Rong Bai, Buyun Tian, Yu Cao, Kangying Chen, Fuyu Li, Yiliang Wang, Yongjie Tang, Qi Yang, Liping Ma, Fan Wang, Maoge Zhou, Xianjie Qiu, Yongzhi Lu, Jie Zheng, Peng Zhou, Xinwen Chen, Qian Liu, Xuepeng Wei, Yongxia Shi, Yanhong Xue, Jincun Zhao, Wei Ji, Liqiao Hu, Jinsai Shang, Tao Xu, Zonghong Li
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Research Article Cell biology Microbiology Virology

Targeting the host factor HGS–viral membrane protein interaction in coronavirus infection

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Abstract

While current antivirals primarily target viral proteins, host-directed strategies remain underexplored. Here, we performed a genome-wide CRISPR inhibition (CRISPRi) screening to identify the host protein, hepatocyte growth factor-regulated tyrosine kinase substrate (HGS), facilitating the pan-coronavirus infection both in vitro and in vivo. Mechanistically, HGS interacts with the viral membrane (M) protein, facilitating its trafficking to the ER-Golgi intermediate compartment for virion assembly. Conversely, HGS deficiency caused M retention in the ER, blocking assembly. Leveraging this interaction, we designed M-derived peptides and screened over 5,000 FDA-approved or commonly used drugs, identifying riboflavin tetrabutyrate (RTB). Both the peptides and RTB bind HGS and disrupt its interaction with the M protein, leading to M retention in the ER and subsequent blockade of virion assembly. These agents demonstrated broad anti-pan-coronavirus activity in vitro and in vivo. Collectively, our findings establish HGS as a druggable host target and identify RTB as a promising broad-spectrum antiviral candidate.

Authors

Xubing Long, Rongrong Chen, Rong Bai, Buyun Tian, Yu Cao, Kangying Chen, Fuyu Li, Yiliang Wang, Yongjie Tang, Qi Yang, Liping Ma, Fan Wang, Maoge Zhou, Xianjie Qiu, Yongzhi Lu, Jie Zheng, Peng Zhou, Xinwen Chen, Qian Liu, Xuepeng Wei, Yongxia Shi, Yanhong Xue, Jincun Zhao, Wei Ji, Liqiao Hu, Jinsai Shang, Tao Xu, Zonghong Li

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Figure 5

RTB exhibits anti-coronavirus activity in vitro, in ALI-cultured HBEs, and in vivo.

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RTB exhibits anti-coronavirus activity in vitro, in ALI-cultured HBEs, a...
(A–G) Dose titration of RTB and RDV for anti-coronavirus activity. Various concentrations of RTB and RDV were used to assess ability to inhibit various coronaviruses’ infection by indirect immunofluorescence assay (IFA). EC50 values of antiviral ability are indicated. (A) SARS-CoV-2 wild-type (MOI = 0.1, hpi = 24 h), (B) SARS-CoV-2 Omicron BA.5 (MOI = 0.1, hpi =24 h), (C) HCoV-NL63 (MOI = 0.1, hpi = 48 h), (D) MHV (MOI = 0.1, hpi = 24 h), (E) HCoV-OC43 (MOI = 0.1, hpi = 48 h), (F) HCoV-229E (MOI = 0.1, hpi = 48 h), (G) WIV1 (MOI = 0.1, hpi = 48 h). (H–K) RTB alleviates coronavirus infection in ALI-cultured HBEs. RT-qPCR analysis of extracellular viral gRNA levels in HCoV-229E (MOI = 1) (H), HCoV-OC43 (MOI = 1) (I), HCoV-NL63 (MOI = 1) (J), WIV1 (MOI = 1) (K) –infected ALI-cultured HBEs with treatment with different doses of RTB or 5 μM RDV for 96 h. (L) Schematic illustrating SARS-CoV-2 Omicron BA.5 infection in K18-hACE2 mice with treatment with or without RTB. SARS-CoV-2 Omicron BA.5-infected mice (2 × 104 FFU) were treated with PBS, molnupiravir (100 mg/kg body weight), RTB (50 or 150 mg/kg body weight), or molnupiravir (100 mg/kg body weight) with RTB (150 mg/kg body weight) every 24 h for 2 or 10 days. (M and N) Survival curves (M) and body weight changes (N) were analyzed after infection with SARS-CoV-2 Omicron BA.5 (N = 9 for each group). (O) Viral titration by FFA with the supernatant of homogenized lung tissues on day 2 (N = 9 for each group). (P) Histopathology of formalin-fixed and HE-stained lung tissues on day 2. Quantitative analysis of pathological severity scores based on the percentage of affected area in lung tissues (N = 5 for each group). Data are the mean ± SD. (H–K, O, and P) One-way ANOVA and Tukey’s multiple-comparison test. *P ≤ 0.05, **P ≤ 0.005, ***P ≤ 0.0005, ****P ≤ 0.0001.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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