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m6A deficiency induces dopaminergic neurodegeneration and progressive parkinsonism through a pathogenic loop with mitochondria
Sun Liu, Qihuan Ren, Guiling Mo, Zengguang Li, Huili Huang, Yuhao Zhou, Ziteng Miao, Xin Cao, Bilian Wu, Zhuoyu Xiao, Shihui Yu, Guangjin Wu, Linjian Xia, Jinru Cui, Junyuan Mo, Yuan Li, Laixin Xia, Juan Shen, Shan Xiao
Sun Liu, Qihuan Ren, Guiling Mo, Zengguang Li, Huili Huang, Yuhao Zhou, Ziteng Miao, Xin Cao, Bilian Wu, Zhuoyu Xiao, Shihui Yu, Guangjin Wu, Linjian Xia, Jinru Cui, Junyuan Mo, Yuan Li, Laixin Xia, Juan Shen, Shan Xiao
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Research Article Genetics Neuroscience

m6A deficiency induces dopaminergic neurodegeneration and progressive parkinsonism through a pathogenic loop with mitochondria

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Abstract

Despite substantial progress in understanding the molecular pathology of Parkinson’s disease (PD), the underlying drivers of PD in many cases remain unknown. Here, we investigate the role of RNA modification in PD, following observations of selective m6A hypomethylation in the substantia nigra (SN) of mouse PD models and dysregulated METTL3 and ALKBH5 expression in dopaminergic (DA) neurons from patients with PD. We found preferential m6A deposition on transcripts of PD risk genes and what we believe to be a previously unreported heterozygous METTL3 p.K480R mutation in patients with PD. Mettl3K480R/+ mice exhibited progressive METTL3 reduction and m6A hypomethylation in the SN, leading to progressive DA neuron loss, phospho-α-synuclein increase, and levodopa-responsive motor and nonmotor deficits, mimicking PD progression. Dopamine transporter–specific METTL3 knockout mice recapitulate m6A hypomethylation, neurodegeneration, and levodopa-responsive parkinsonism. Mechanistically, m6A deficiency disrupted mitochondrial biogenesis and function through regulating Tfam expression, while mitochondrial dysfunction reciprocally impaired m6A deposition, creating a pathogenic loop. Importantly, supplementation with S-adenosylmethionine (SAMe) enhanced m6A modification, disrupted the pathogenic loop, and alleviated parkinsonism in mouse models. Our findings revealed m6A dysregulation as an important contributor to PD pathogenesis, provide a valuable preclinical mouse model for PD progression, and highlight RNA methylation-targeted therapies as a promising strategy for PD intervention.

Authors

Sun Liu, Qihuan Ren, Guiling Mo, Zengguang Li, Huili Huang, Yuhao Zhou, Ziteng Miao, Xin Cao, Bilian Wu, Zhuoyu Xiao, Shihui Yu, Guangjin Wu, Linjian Xia, Jinru Cui, Junyuan Mo, Yuan Li, Laixin Xia, Juan Shen, Shan Xiao

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Figure 1

m6A modification deficiency is associated with PD.

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m6A modification deficiency is associated with PD.
(A) LC-MS/MS quantifi...
(A) LC-MS/MS quantification of mRNA m6A abundance in different brain regions from saline- or MPTP-treated mice (n = 5). (B and C) UMAP reanalysis of published snRNA-seq data (accession number GSE178265) (B) and UMAP visualization of METTL3 expression (C) from the SNc of patients with PD and matched individuals acting as controls. Color intensity indicates relative expression levels. (D) Heatmap showing the average expression levels of m6A regulators in DA neurons from individuals acting as controls (n = 15,458 from 8 individuals) and patients with PD (n = 2,430 from 7 individuals) (left). Box plots showing differential expression of m6A regulators in DA neurons of patients with PD versus individuals acting as controls (right). (E) Enrichment of m6A deposition on transcripts of PD risk genes by Fisher’s exact test. PD risk genes were obtained from DisGeNET using the identifier Parkinson disease (C0030567). The human brain meRIP-seq data were taken from 2 published studies (32, 33). (F) Whole-exome sequencing (WES) data analysis pipeline. Schematic diagram showing mutation sites in m6A methyltransferase and demethylase genes identified in patients with PD. pLoF, predicted loss of function. (G) Sequence alignment of METTL3 showing conservation of K480. (H) Immunoblot showing the protein level of METTL3, METTL14, and WTAP from WT and Mettl3K480R/K480R mESCs. (I) Protein quantification corresponding to H (n = 3). (J) Co-IP showing the interaction of WTAP and METTL14 with SFB-tagged METTL3 or METTL3 K480R. (K) Protein quantification corresponding to J (n = 2 independent biological samples per group). (L) LC-MS/MS quantification of m6A abundance in mRNA from WT and Mettl3K480R/K480R mESCs (n = 3). Data are shown as the mean ± SD; Wilcoxon’s rank-sum test (D), Fisher’s exact test (E), and 2-tailed Student’s t test (I and L). *P < 0.05, ***P < 0.001, ****P < 0.0001.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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