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Variants in human CD48 lead to impaired T cell immunity and increased inflammation
Samantha Milanesi, Tiziana Lorenzini, Tommaso Marchetti, Diana Tintor, Raquel Planas, Ola Sabet, Lars Malmström, Sudip Acharya, Carson D. Williams, Zoe E. Manning, Jack H. Roser, Angelica C. Ehler, Michael Huber, Seraina Prader, Stefano Vavassori, Cullen M. Dutmer, Jordan K. Abbott, Jana Pachlopnik Schmid
Samantha Milanesi, Tiziana Lorenzini, Tommaso Marchetti, Diana Tintor, Raquel Planas, Ola Sabet, Lars Malmström, Sudip Acharya, Carson D. Williams, Zoe E. Manning, Jack H. Roser, Angelica C. Ehler, Michael Huber, Seraina Prader, Stefano Vavassori, Cullen M. Dutmer, Jordan K. Abbott, Jana Pachlopnik Schmid
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Research Article Immunology Inflammation

Variants in human CD48 lead to impaired T cell immunity and increased inflammation

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Abstract

CD48 is a surface molecule with immunoregulatory functions. Following our initial report of a patient with a de novo heterozygous variant at amino acid S220 in the CD48 gene, we describe a second, unrelated patient with similar features of immune dysregulation and a missense change affecting the same residue. To further elucidate the specific pathogenic mechanisms of the identified variants, we reviewed patient records, analyzed patient-derived cells, and employed complementary in vitro and in vivo model systems, including transfected cell lines and CD48-deficient mice. We demonstrate that the variants are associated with altered distribution of CD48, characterized by diminished CD48 surface expression, intracellular retention, and activation of ER stress signaling. Patient T cells displayed increased susceptibility to apoptosis, reduced antiviral responses, and enhanced inflammation. Both patients exhibited T cell lymphopenia, a restricted T cell receptor repertoire diversity, and oligoclonal expansions consistent with antigen-driven selection. In parallel, virally infected CD48-deficient mice recapitulate key aspects of the human phenotype, including delayed antiviral immune responses, impaired viral clearance, and pronounced inflammation. We conclude that identified variants compromise CD48 cell surface localization, impair T cell survival and function, and predispose to inflammation, thereby highlighting the role of CD48 in immune regulation and the prevention of excessive inflammation.

Authors

Samantha Milanesi, Tiziana Lorenzini, Tommaso Marchetti, Diana Tintor, Raquel Planas, Ola Sabet, Lars Malmström, Sudip Acharya, Carson D. Williams, Zoe E. Manning, Jack H. Roser, Angelica C. Ehler, Michael Huber, Seraina Prader, Stefano Vavassori, Cullen M. Dutmer, Jordan K. Abbott, Jana Pachlopnik Schmid

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Figure 5

Impaired viral clearance, delayed immune reaction, and inflammation in CD48–/– mice.

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Impaired viral clearance, delayed immune reaction, and inflammation in C...
(A) Schematic of the in vivo experiments. 6 days: WT NaCl (n = 3), WT LCMV (n = 6), CD48–/– NaCl (n = 2), CD48–/– LCMV (n = 7); 15 days: WT NaCl (n = 4), WT LCMV (n = 8), CD48–/– NaCl (n = 6), CD48–/– LCMV (n = 9), 21 days: WT NaCl (n = 4), WT LCMV (n = 3), CD48–/– NaCl (n = 2), WT LCMV (n = 6), CD48–/– LCMV (n = 6). (B) Scatterplot showing real-time PCR analysis of total mRNA isolated from the spleens of WT and CD48–/– mice infected with LCMV at 6, 15, and 21 dpi. LCMV/β-actin relative expression was normalized to the WT at 15 dpi. (C) Scatterplots with bars showing blood lymphocyte counts at baseline and postinfection in CD48–/– and WT mice. (D) Blood T cell counts during infection in WT and CD48–/– mice. The shaded area represents the SD of the samples. (E) Scatterplot with bars showing a comparative analysis of naive, CM, and EM CD8+ T cells in the spleen during infection in CD48–/– and WT mice. (D and E) At each time point, differences between selected groups were assessed using 2-way ANOVA followed by Šidák’s multiple-comparison test. (F) Scatterplots with bars of IFN-γ, TNF-α, CCL2, and CXCL10 levels in mouse serum at different time points postinfection. (G and H) Scatterplots with bars showing the proportions of CD44+IFN-γ+CD8+ T cells in the blood and Ki-67+CD8+ T cells in the spleen at 6 and 21 dpi. At each time point in B, C, and F–H, differences between selected groups were assessed using 1-way ANOVA followed by Tukey’s multiple-comparison test. Graphs in B–H display the mean ± SD.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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