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Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations
Yuliang L. Sun, Erin E. Hennessey, Hillary Heins, Ping Yang, Carlos Villacorta-Martin, Julian Kwan, Krithi Gopalan, Marianne James, Andrew Emili, F. Sessions Cole, Jennifer A. Wambach, Darrell N. Kotton
Yuliang L. Sun, Erin E. Hennessey, Hillary Heins, Ping Yang, Carlos Villacorta-Martin, Julian Kwan, Krithi Gopalan, Marianne James, Andrew Emili, F. Sessions Cole, Jennifer A. Wambach, Darrell N. Kotton
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Research Article Cell biology

Human pluripotent stem cell modeling of alveolar type 2 cell dysfunction caused by ABCA3 mutations

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Abstract

Mutations in ATP-binding cassette A3 (ABCA3), a phospholipid transporter critical for surfactant homeostasis in pulmonary alveolar type II epithelial cells (AEC2s), are the most common genetic causes of childhood interstitial lung disease (chILD). Treatments for patients with pathological variants of ABCA3 mutations are limited, in part due to a lack of understanding of disease pathogenesis resulting from an inability to access primary AEC2s from affected children. Here, we report the generation of AEC2s from affected patient induced pluripotent stem cells (iPSCs) carrying homozygous versions of multiple ABCA3 mutations. We generated syngeneic CRISPR/Cas9 gene-corrected and uncorrected iPSCs and ABCA3-mutant knockin ABCA3:GFP fusion reporter lines for in vitro disease modeling. We observed an expected decreased capacity for surfactant secretion in ABCA3-mutant iPSC-derived AEC2s (iAEC2s), but we also found an unexpected epithelial-intrinsic aberrant phenotype in mutant iAEC2s, presenting as diminished progenitor potential, increased NFκB signaling, and the production of pro-inflammatory cytokines. The ABCA3:GFP fusion reporter permitted mutant-specific, quantifiable characterization of lamellar body size and ABCA3 protein trafficking, functional features that are perturbed depending on ABCA3 mutation type. Our disease model provides a platform for understanding ABCA3 mutation–mediated mechanisms of alveolar epithelial cell dysfunction that may trigger chILD pathogenesis.

Authors

Yuliang L. Sun, Erin E. Hennessey, Hillary Heins, Ping Yang, Carlos Villacorta-Martin, Julian Kwan, Krithi Gopalan, Marianne James, Andrew Emili, F. Sessions Cole, Jennifer A. Wambach, Darrell N. Kotton

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Figure 4

Protein trafficking and lamellar body phenotypes are recapitulated in response to lentiviral forced overexpression of mutant and normal ABCA3:GFP fusion proteins in A549 cell lines.

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Protein trafficking and lamellar body phenotypes are recapitulated in re...
(A) Schematic showing locations and sequencing confirmation of 3 introduced ABCA3 mutations in 3 separate lentiviral vectors (each vector contains no or only 1 mutation, denoted by *) used to transduce A549 cells. Each of the 4 lentiviral vectors expressing WT or mutant ABCA3:GFP fusion constructs were driven by a constitutively active promoter EF1aL. *, Site directed mutagenesis of missense mutations confirmed by sequencing. (B) Representative confocal fluorescence microscopy of A549 cells expressing WT and L101P ABCA3:GFP fusion proteins (green) costained with lamellar body marker LAMP3 (red, left) and ER marker calnexin (red, right). Nuclei (blue). Scale bars: 10 μm. (C) Representative live-cell high resolution confocal images showing smaller GFP+ intracellular vesicles formed in cells expressing E690K or W308R mutant ABCA3:GFP fusion proteins compared with WT fusion protein. Nucleus (n), dotted lines. Scale bars: 5 μm. (D) Quantitation of the diameter of GFP+ intracellular vesicles in indicated A549 samples. ****P ≤ 0.0001 by 1-way ANOVA with Tukey’s multiple comparisons test. (E) Western blot using antibody against GFP to compare 220 kDa to 180 kDa protein cleavage of WT versus E690K, W308R, and L101P mutant ABCA3:GFP fusion proteins over 3 replicates. (F) Quantification of percentage of total ABCA3:GFP protein cleaved in each indicated sample. **P ≤ 0.01 by 1-way ANOVA with Tukey’s multiple comparisons test.

Copyright © 2026 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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