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Mandibulofacial dysostosis with alopecia results from ETAR gain-of-function mutations via allosteric effects on ligand binding
Yukiko Kurihara, Toru Ekimoto, Christopher T. Gordon, Yasunobu Uchijima, Ryo Sugiyama, Taro Kitazawa, Akiyasu Iwase, Risa Kotani, Rieko Asai, Véronique Pingault, Mitsunori Ikeguchi, Jeanne Amiel, Hiroki Kurihara
Yukiko Kurihara, Toru Ekimoto, Christopher T. Gordon, Yasunobu Uchijima, Ryo Sugiyama, Taro Kitazawa, Akiyasu Iwase, Risa Kotani, Rieko Asai, Véronique Pingault, Mitsunori Ikeguchi, Jeanne Amiel, Hiroki Kurihara
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Research Article Development Genetics

Mandibulofacial dysostosis with alopecia results from ETAR gain-of-function mutations via allosteric effects on ligand binding

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Abstract

Mutations of G protein–coupled receptors (GPCRs) cause various human diseases, but the mechanistic details are limited. Here, we establish p.E303K in the gene encoding the endothelin receptor type A (ETAR/EDNRA) as a recurrent mutation causing mandibulofacial dysostosis with alopecia (MFDA), with craniofacial changes similar to those caused by p.Y129F. Mouse models carrying either of these missense mutations exhibited a partial maxillary-to-mandibular transformation, which was rescued by deleting the ligand endothelin 3 (ET3/EDN3). Pharmacological experiments confirmed the causative ETAR mutations as gain of function, dependent on ET3. To elucidate how an amino acid substitution far from the ligand binding site can increase ligand affinity, we used molecular dynamics (MD) simulations. E303 is located at the intracellular end of transmembrane domain 6, and its replacement by a lysine increased flexibility of this portion of the helix, thus favoring G protein binding and leading to G protein–mediated enhancement of agonist affinity. The Y129F mutation located under the ligand binding pocket reduced the sodium-water network, thereby affecting the extracellular portion of helices in favor of ET3 binding. These findings provide insight into the pathogenesis of MFDA and into allosteric mechanisms regulating GPCR function, which may provide the basis for drug design targeting GPCRs.

Authors

Yukiko Kurihara, Toru Ekimoto, Christopher T. Gordon, Yasunobu Uchijima, Ryo Sugiyama, Taro Kitazawa, Akiyasu Iwase, Risa Kotani, Rieko Asai, Véronique Pingault, Mitsunori Ikeguchi, Jeanne Amiel, Hiroki Kurihara

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Figure 7

ETAR-Y129F prevents dissociation of ET3 by increasing probability of reduced distance between helices.

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ETAR-Y129F prevents dissociation of ET3 by increasing probability of red...
(A) Comparison of representative structures of ET3 bound to ETAR-Y129F (active, pink) and Na-bound ETAR-Y129F (inactive, grey). Dashed line connects D18Cα of ET3 and R326Cα of ETAR-Y129F. (B) Probability distribution of distances between D18 of ET3 and R326 of ETAR-WT or -Y129F (grey and light pink, respectively), overlaid with the distribution of probabilities of hydrogen bonding between these residues in each case (dark pink for ETAR-Y129F and black for ETAR-WT). (C) Schematic representation of HBs between ET3 residues (orange ovals) and TM residues of ETAR (rectangles). The solid lines between pairs of residues indicate the presence of HBs, and the thickness of the line represents the probability of the HB. HB probabilities of less than 5.00% are omitted, including 4.00% for R326-W21 and 2.27% for R326-D18 for ETAR-WT. Yellow dashed line shows the main chain of the ET3 peptide. (D) Intracellular calcium mobilization assay in HeLa cells. R326Q mutants are shown in bold lines. Changes in calcium concentrations in response to each ET3 (upper) or ET1 (lower) concentration are plotted as mean ± SEM (also see Supplemental Table 4) from more than 4 independent experiments. RFU, relative fluorescent unit. (E) The distance between D18 Cα of ET3 (upper) or ET1 (lower) and R/Q326 Cα of ETARs. R326Q mutants are shown in bold lines. (F) Presumed mechanism for the enhanced affinity of ETAR-Y129F for ET3. The number of water molecules within the water network around Y129 decreases upon Y-to-F substitution, thereby increasing the probability of a state with a narrowed ligand pocket, leading to increased hydrogen bonding with ET3.

Copyright © 2025 American Society for Clinical Investigation
ISSN: 0021-9738 (print), 1558-8238 (online)

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