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Transcription factor FOXF1 identifies compartmentally distinct mesenchymal cells with a role in lung allograft fibrogenesis
Russell R. Braeuer, … , Joshua D. Welch, Vibha N. Lama
Russell R. Braeuer, … , Joshua D. Welch, Vibha N. Lama
Published September 21, 2021
Citation Information: J Clin Invest. 2021;131(21):e147343. https://doi.org/10.1172/JCI147343.
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Concise Communication Cell biology Pulmonology

Transcription factor FOXF1 identifies compartmentally distinct mesenchymal cells with a role in lung allograft fibrogenesis

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Abstract

In this study, we demonstrate that forkhead box F1 (FOXF1), a mesenchymal transcriptional factor essential for lung development, was retained in a topographically distinct mesenchymal stromal cell population along the bronchovascular space in an adult lung and identify this distinct subset of collagen-expressing cells as key players in lung allograft remodeling and fibrosis. Using Foxf1-tdTomato BAC (Foxf1-tdTomato) and Foxf1-tdTomato Col1a1-GFP mice, we show that Lin–Foxf1+ cells encompassed the stem cell antigen 1+CD34+ (Sca1+CD34+) subset of collagen 1–expressing mesenchymal cells (MCs) with a capacity to generate CFU and lung epithelial organoids. Histologically, FOXF1-expressing MCs formed a 3D network along the conducting airways; FOXF1 was noted to be conspicuously absent in MCs in the alveolar compartment. Bulk and single-cell RNA-Seq confirmed distinct transcriptional signatures of Foxf1+ and Foxf1– MCs, with Foxf1-expressing cells delineated by their high expression of the transcription factor glioma-associated oncogene 1 (Gli1) and low expression of integrin α8 (Itga), versus other collagen-expressing MCs. FOXF1+Gli1+ MCs showed proximity to Sonic hedgehog–expressing (Shh-expressing) bronchial epithelium, and mesenchymal expression of Foxf1 and Gli1 was found to be dependent on paracrine Shh signaling in epithelial organoids. Using a murine lung transplant model, we show dysregulation of epithelial-mesenchymal SHH/GLI1/FOXF1 crosstalk and expansion of this specific peribronchial MC population in chronically rejecting fibrotic lung allografts.

Authors

Russell R. Braeuer, Natalie M. Walker, Keizo Misumi, Serina Mazzoni-Putman, Yoshiro Aoki, Ruohan Liao, Ragini Vittal, Gabriel G. Kleer, David S. Wheeler, Jonathan Z. Sexton, Carol F. Farver, Joshua D. Welch, Vibha N. Lama

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Figure 3

Bulk and single-cell transcriptomic analysis of Foxf1_MCs.

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Bulk and single-cell transcriptomic analysis of Foxf1_MCs.
(A) Principal...
(A) Principal component (PC) analysis plot from affymetrix analysis of sorted populations of MCs from adult Foxf1-tdTomato Col1GFP mice. (B) Heatmap comparing Foxf1-tdTomato+ (TD+) and Foxf1-tdTomato– (TD–) CD45–Col1+ MCs for selected genes. (C and D) FOXF1 immunostaining of adult lung tissue from Gli1CreERT2/WT Rosa26mTmG/WT (C) and Col1GFP (D) mice. n = 3. Scale bars: 50 μm and 10 μm (insets). Arrowheads indicate FOXF1+Gli1GFP-expressing subepithelial peribronchial MCs (C) and ITGA8+FOXF1–Col1GFP+ MCs in the alveoli (D). (E) Uniform manifold approximation and projection (UMAP) representation of 11,118 scRNA-Seq profiles; each dot represents a single cell. Cells are colored to indicate their membership in 1 of 14 clusters. (F) UMAP plots of specific genes. The coordinates are the same as in E, but the color indicates the expression level of the gene within each cell. (G) Correlation plot from scRNA-Seq analysis. Pearson’s correlation test.

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ISSN: 0021-9738 (print), 1558-8238 (online)

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