Although generating large amounts of proteomic data using tandem mass spectrometry has
become routine, there is currently no single set of comprehensive tools for the rigorous
analysis of tandem mass spectrometry results given the large variety of possible
experimental aims. Currently available applications are typically designed for displaying
proteins and posttranslational modifications from the point of view of the mass spectrometrist
and are not versatile enough to allow investigators to develop biological models of protein …