YfiD of Escherichia coli and Y06I of bacteriophage T4 as autonomous glycyl radical cofactors reconstituting the catalytic center of oxygen-fragmented pyruvate formate …

AFV Wagner, S Schultz, J Bomke, T Pils… - Biochemical and …, 2001 - Elsevier
AFV Wagner, S Schultz, J Bomke, T Pils, WD Lehmann, J Knappe
Biochemical and biophysical research communications, 2001Elsevier
Reaction of oxygen with the glycyl radical in pyruvate formate-lyase (PFL) leads to cleavage
of the polypeptide backbone between N–Cα of Gly734. A recombinant protein comprising
the core of PFL (Ser1–Ser733) is shown here to associate with the YfiD protein (14 kDa) of
Escherichia coli and likewise with the homologous T4 encoded Y06I protein, yielding upon
reaction with PFL activase a heterooligomeric PFL enzyme that has full catalytic activity (35
U/nmol). Treatment of the activated complexes with oxygen led to cleavage of the 14 kDa …
Reaction of oxygen with the glycyl radical in pyruvate formate-lyase (PFL) leads to cleavage of the polypeptide backbone between N–Cα of Gly734. A recombinant protein comprising the core of PFL (Ser1–Ser733) is shown here to associate with the YfiD protein (14 kDa) of Escherichia coli and likewise with the homologous T4 encoded Y06I protein, yielding upon reaction with PFL activase a heterooligomeric PFL enzyme that has full catalytic activity (35 U/nmol). Treatment of the activated complexes with oxygen led to cleavage of the 14 kDa proteins into 11 and 3 kDa polypeptides as expected for the localization of the putative glycyl radical at Gly102 (YfiD) or Gly95 (Y06I). For the isolated fragments from Y06I, mass spectrometric analysis (nanoESI-MS) determined a C-terminal serine carboxamide in the 11 kDa fragment, and a N-terminal oxalyl modification in the 3 kDa fragment. We speculate that YfiD in E. coli and other facultative anaerobic bacteria has evolved as a “spare part” for PFL's glycyl radical domain, utilized for rapid recovery of PFL activity (and thus ATP generation) in cells that have experienced oxidative stress.
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