Dissecting the cofactor-dependent and independent bindings of PDE4 inhibitors

S Liu, F Laliberté, B Bobechko, A Bartlett, P Lario… - Biochemistry, 2001 - ACS Publications
S Liu, F Laliberté, B Bobechko, A Bartlett, P Lario, E Gorseth, J Van Hamme, MJ Gresser…
Biochemistry, 2001ACS Publications
Type 4 phosphodiesterases (PDE4s) are metallohydrolases that catalyze the hydrolysis of
cAMP to AMP. At the bottom of its active site lie two divalent metal ions in a binuclear motif
which are involved in both cAMP binding and catalysis [(2000) Science 288, 1822−
1825;(2000) Biochemistry 39, 6449− 6458]. Using a SPA-based equilibrium [3H] rolipram
binding assay, we have determined that Mg2+, Mn2+, and Co2+ all mediated a high-affinity
(K d between 3 and 8 nM) and near stoichiometric (R)-rolipram binding to PDE4. In their …
Type 4 phosphodiesterases (PDE4s) are metallohydrolases that catalyze the hydrolysis of cAMP to AMP. At the bottom of its active site lie two divalent metal ions in a binuclear motif which are involved in both cAMP binding and catalysis [(2000) Science 288, 1822−1825; (2000) Biochemistry 39, 6449−6458]. Using a SPA-based equilibrium [3H]rolipram binding assay, we have determined that Mg2+, Mn2+, and Co2+ all mediated a high-affinity (Kd between 3 and 8 nM) and near stoichiometric (R)-rolipram binding to PDE4. In their absence, (R)-rolipram binds stoichiometrically to the metal ion-free apoenzyme with a Kd of ∼150 nM. The divalent cation dose responses in mediating the high-affinity rolipram/PDE4 interaction mirror their efficacy in catalysis, suggesting that both metal ions of the holoenzyme are involved in mediating the high-affinity (R)-rolipram/PDE4 interaction. The specific rolipram binding to the apo- and holoenzyme is differentially displaced by cAMP, AMP, and other inhibitors, providing a robust tool to dissect the components of metal ion-dependent and independent PDE4/ligand interactions. cAMP binds to the holoenzyme with a Ks of 1.9 μM and nonproductively to the apoenzyme with a Kd of 179 μM. In comparison, AMP binds to the holo- and apoenzyme with Kd values of 7 and 11 mM, respectively. The diminished Mg2+-dependent component of AMP binding to PDE4 suggests that most of the Mg2+/phosphate interaction in the cAMP/PDE4 complex is disrupted upon the hydrolysis of the cyclic phosphoester bond, leading to the rapid release of AMP.
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