Published in Volume
123, Issue 9
(September 3, 2013)J Clin Invest.
Copyright © 2013, American Society for Clinical Investigation
Increased Fanconi C expression contributes to the emergency granulopoiesis response
1Feinberg School of Medicine and Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, Illinois, USA.
2Jesse Brown VA Medical Center, Chicago, Illinois, USA.
Address correspondence to: Elizabeth A. Eklund, Department of Medicine, The Feinberg School at Northwestern University, 303 E. Superior, Lurie 5-105, Chicago, Illinois 60611, USA. Phone: 312.503.3208; Fax: 312.503.0189; E-mail:
First published August 8, 2013
Submitted: January 28,
2013; Accepted: June 13,
Emergency granulopoiesis is a component of the innate immune response that is induced in response to infectious or inflammatory challenge. It is characterized by the rapid expansion and differentiation of granulocyte/monocyte progenitor (GMP) populations, which is due in part to a shortened S-phase of the cell cycle. We found that IRF8 (also known as ICSBP), an interferon regulatory transcription factor that activates phagocyte effector genes during the innate immune response, activates the gene encoding Fanconi C (Fancc) in murine myeloid progenitor cells. Moreover, IRF8-induced Fancc transcription was augmented by treatment with IL-1β, an essential cytokine for emergency granulopoiesis. The Fanconi pathway participates in repair of stalled or collapsed replication forks during DNA replication, leading us to hypothesize that the Fanconi pathway contributes to genomic stability during emergency granulopoiesis. In support of this hypothesis, Fancc–/– mice developed anemia and neutropenia during repeated, failed episodes of emergency granulopoiesis. Failed emergency granulopoiesis in Fancc–/– mice was associated with excess apoptosis of HSCs and progenitor cells in the bone marrow and impaired HSC function. These studies have implications for understanding the pathogenesis of bone marrow failure in Fanconi anemia and suggest possible therapeutic approaches.
The interferon consensus sequence binding protein (ICSBP) is an interferon regulatory transcription factor that was cloned by homology to interferon regulatory factors 1 and 2 (referred to as ICSBP or IRF8) (1). IRF8 is expressed in HSCs, myeloid and B progenitor cells, and mature phagocytes and B cells. IRF8 activates transcription of a number of genes that encode phagocyte effector proteins, including gp91phox, p67phox, and IL-18 (2–4). In previous studies, we found that IRF8 contributes to phagocyte function during the innate immune response by activating these genes (2, 3). A murine model with Irf8 gene disruption provided additional clues regarding IRF8 function (5, 6). In these studies, the biology of IRF8-deficient mice was dominated by mild steady-state granulocytosis (5, 6). However, these mice were susceptible to infection due to impaired B cell and phagocyte function (5, 6). And Irf8–/– mice failed to develop leukocytosis during infectious challenge and succumbed rapidly to overwhelming infection (i.e., impaired emergency granulopoiesis).
Emergency granulopoiesis (or stress granulopoiesis) is a specific response to infectious or inflammatory challenge and represents an essential component of the innate immune response. In contrast, steady-state granulopoiesis is an ongoing process that replaces neutrophils depleted by the normal programmed cell death. During the first hours after infectious challenge, emergency granulopoiesis is characterized by an increase in circulating neutrophils due to vascular demargination and release from the bone marrow. This process is maximal in 24 hours after infection. Subsequently, accelerated differentiation and expansion of HSC and granulocyte/monocyte progenitor (GMP) populations in the bone marrow occurs. Expansion of these progenitor populations is due, in part, to shortened S-phase of the cell cycle. This proliferative phase of emergency granulopoiesis is maximal at 10 to 14 days (7, 8).
Emergency granulopoiesis and steady-state granulopoiesis are controlled by different molecular mechanisms. Murine genetic studies determined that STAT3 and C/EBPβ are required for emergency granulopoiesis but are dispensable for steady-state granulopoiesis (9, 10). Murine studies also demonstrated that the IL-1 receptor (IL-1R) is essential for emergency, but not steady-state, granulopoiesis (7). Disrupting the gene encoding G-CSF decreased emergency granulopoiesis but did not abolish the response (11, 12). This is of interest, because IL-1β is required for the increase in G-CSF expression that is observed during emergency granulopoiesis (8, 13).
In previous chromatin immunoprecipitation–based screening studies, we identified a set of IRF8 target genes that are involved in regulating granulopoiesis and the innate immune response. This set included genes that terminate cytokine-induced proliferation (NF1 and GAS2), increase sensitivity of phagocytes to Fas-induced apoptosis (PTPN13), and are involved in DNA repair (FANCF) (14–17). We found that IRF8 activated FANCF (the gene encoding Fanconi F) in bone marrow progenitor cells that were stimulated with differentiating cytokines (17). In this study, we determined that IRF8 also controls the gene encoding Fanconi C (FANCC). Based on these results, we considered the possibility that IRF8 protects cells from the genotoxic stress of myelopoiesis by controlling a DNA repair pathway. Because of the functional connection between IRF8 and the innate immune response, we hypothesized that IRF8-induced Fanconi expression might be especially relevant to emergency granulopoiesis.
The Fanconi DNA repair pathway includes 15 proteins (also referred to as complementation groups), and absence of any of complementation group results in Fanconi anemia (FA) (18, 19). Fanconi proteins are characterized as core (Fanconi A, B, C, E, F, G, M, N), substrate (Fanconi D2 and I), or effector (Fanconi D1, J, L, O, P) proteins. Assembly of the core complex results in monoubiquitination of Fanconi D2 and I, which results in assembly on DNA of a homologous recombination repair (HRR) complex that includes Fanconi O, P, and J as well as RAD51 and the MRE11-RAD50-NBS11 (MRN) complex (reviewed in refs. 18–20). The Fanconi pathway also participates in DNA repair through translesional synthesis (TLS) (20). In this case, the Fanconi core proteins interact with Polζ and Rev1 to activate BRCA1 and FANCJ (20). Since the Fanconi pathway is nonredundant for HRR and TLS, deficiency of any Fanconi protein causes defective DNA cross-link repair (21). Recent studies identified repair of stalled or collapsed replication forks as major functions of the Fanconi pathway (22, 23). Consistent with this, Fanconi D2 (FANCD2) associates with DNA during S-phase, even without DNA damage (24).
FA is a genetic disorder with variable phenotype that is characterized by bone marrow failure in childhood (18, 19). This may be due to apoptosis of HSCs and/or committed progenitor cells with damaged DNA. Patients who survive the bone marrow failure phase of FA frequently develop myelodysplasia and progress to acute myeloid leukemia (AML). This is hypothesized to occur as mutations accumulate in genes that regulate cell cycle checkpoints and the apoptotic responses to DNA damage (25, 26). The hypothesis of these studies is that IRF8-induced expression of Fanconi proteins facilitates repair of stalled or collapsed replication forks during shortened S-phase of emergency granulopoiesis. If this hypothesis is correct, absence of Fanconi proteins would result in a failed emergency granulopoiesis response. We investigate this hypothesis using a Fanconi C–deficient (FANCC-deficient) murine model.
IRF8 influences expression of FANCC. We previously determined that treatment of myeloid progenitor cells with differentiating cytokines increased expression of FANCF (17). In this study, we considered the possibility that these cytokines also induce expression of other Fanconi proteins. To investigate this, CD34+ cells were isolated from the bone marrow of C57 Black 6 mice and cultured in GM-CSF, IL-3, and SCF. This population was enriched for GMP cells (SCA1–KIT+CD34+CD38–GR1–) (16, 27). Some cells were cultured under these conditions (referred to as GMP culture conditions), followed by treatment with emergency granulopoiesis–related cytokines, IL-1β or G-CSF. Cytokine treatment induced differentiation of cultured cells (increase in CD34–CD38+GR1+ cells), as previously demonstrated (28, 29).
Cells were analyzed by real-time PCR for expression of 2 Fanconi core proteins (FANCF and FANCC) and a Fanconi substrate protein (FANCD2). We found that treatment with IL-1β or G-CSF significantly increased Fancf or Fancc mRNA (P < 0.001, n = 6) (Figure 1A). There was no statistically significant difference in expression of Fancf or Fancc mRNA in cells treated with these 2 cytokines (P > 0.1, n = 6). In contrast, expression of FANCD2 was not consistently altered by either cytokine (data not shown). We also studied bone marrow from Irf8–/– mice to investigate the role of IRF8 in FANCC expression. For these experiments, we used Irf8–/– mice in proliferative phase (i.e., granulocytosis with mature neutrophils; prior to development of blast crisis) (6, 30). We found no statistically significant difference in Fancf and Fancc mRNA in WT bone marrow cells cultured under GMP conditions in comparison with similarly cultured Irf8–/– cells (Figure 1A). However, unlike WT cells, treatment of Irf8–/– cells with G-CSF or IL-1β did not increase expression of Fancf or Fancc mRNA. Differences in FANCC expression in Irf8–/– versus WT cells were also present at the protein level (Figure 1B).
IRF8 influences FANCC expression in myeloid progenitor cells. (A) IL-1β or G-CSF increase Fancc mRNA expression in myeloid progenitor cells from WT mice but not Irf8–/– mice. Bone marrow from WT or Irf8–/– mice was cultured under GMP conditions (enriched for CD34+ cells). Some cells were treated with IL-1β or G-CSF. Fancc and Fancf mRNA was quantified by real-time PCR. Statistically significant differences in expression with versus without differentiation are indicated by *P < 0.01 or **P < 0.01 and with versus without IRF8-knockout by ***P < 0.01. There was no significant difference between IL-1β versus G-CSF induced expression (P > 0.1). (B) IL-1β increases FANCC protein in WT but not Irf8–/– myeloid progenitor cells. The cells were analyzed by Western blots serially probed with antibody to FANCC and tubulin (loading control). (C) IL-1β increases FANCC, FANCJ, and RAD51 in the chromatin-enriched cell fraction. Bone marrow CD34+ cells from WT mice were treated with IL-1β for 24 or 48 hours, and chromatin and soluble fractions were evaluated by Western blots serially probed with antibodies to FANCC, FANCJ, RAD51, and GAPDH (loading control). (D) IL-1β and retinoic acid increase Fancc mRNA expression in U937 myeloid leukemia cells. U937 cells were stably transfected with an IRF8 expression vector or control vector. Cells were treated with IL-1β or RA/DMF, and Fancc mRNA was quantified by real-time PCR. Statistically significant differences in expression with versus without differentiation are indicated by *P < 0.01 or **P < 0.01 and with versus without IRF8 overexpression by #P < 0.01, ##P < 0.01, or ###P < 0.01.
In control experiments, we found that Irf8–/– murine bone marrow cells exhibited the same immunophenotype as WT cells under GMP culture conditions (as in our previous studies and those of others; refs. 6, 28–30). This was consistent with intact steady-state granulopoiesis in Irf8–/– mice prior to accumulation of mutations leading to blast crisis, as previously demonstrated (6, 30). Also similar to WT cells, treatment of Irf8–/– murine myeloid progenitor cells with IL-1β or G-CSF increased expression of cell surface markers associated with granulocyte maturation (>80% CD34–CD38+GR1+ cells at 48 hours, as for WT cells). This was consistent with a more specific role for IRF8 in FANCC or FANCF expression, rather than a more general effect of IRF8 on differentiation block.
Since expression of 2 Fanconi core proteins was increased by treatment of bone marrow progenitor cells with IL-1β or G-CSF, we hypothesize that the Fanconi pathway might be activated during emergency granulopoiesis. To investigate this, WT murine bone marrow cells were cultured under GMP conditions, followed by treatment with IL-1β for 24 or 48 hours. Cells were fractionated into chromatin-enriched versus soluble components, and proteins were analyzed by Western blot (31). We found that 24 hours of IL-1β treatment increased FANCC protein in the chromatin-enriched fraction of these cells, accompanied by a decrease in FANCC in the soluble fraction (Figure 1C). We also found that IL-1β treatment increased RAD51 and FANCJ proteins in the chromatin-enriched fraction and decreased these proteins in the soluble fraction (Figure 1C). This experiment was repeated twice, and a representative blot is shown (Figure 1C). RAD51 is associated with HRR, and FANCJ is associated with HRR and TLS (18–20), suggesting both DNA repair mechanisms may be activated during emergency granulopoiesis.
To identify a cell line model for Fancc promoter analysis, we also investigated Fancc mRNA expression in U937 leukemia cells. These cells are myelomonocytic progenitors that undergo granulocyte differentiation in response to various agents, including retinoic acid and dimethyl formamide (RA/DMF) or IL-1β (32). We generated IRF8-overexpressing stable U937 transfectants and analyzed Fanconi expression with or without IL-1β or RA/DMF. We found significantly more Fancc expression in IRF8-overexpressing transfectants in comparison with that in transfectants with control vector (~50% increase with IRF8 overexpression versus control, P < 0.001, n = 4) (Figure 1D). Treatment with IL-1β or RA/DMF further increased Fancc mRNA in IRF8-overexpressing transfectants (P < 0.001, n = 4) (Figure 1D) and augmented the difference between control and IRF8-overexpressing cells (~70% more Fancc mRNA in IL-1β– or RA/DMF-treated, IRF8-overexpressing transfectants versus similarly treated control transfectants).
Fancc is an IRF8 target gene. We investigated activation of the Fancc promoter by IRF8 using a series of reporter constructs with sequence from the proximal Fancc 5′ flank (starting at 1.5 kb relative to the transcription start site). Constructs were designed around potential IRF8-binding sequences (Figure 2A, consensus sequences in red). U937 cells were cotransfected with these promoter/reporter constructs (or empty control vector) and a vector to overexpress IRF8 (or control vector) and analyzed for reporter activity, with or without differentiation. We found that IRF8 overexpression significantly increased activity of constructs with at least 56 bp of Fancc promoter sequence but not a construct with 48 bp (Figure 2B). This suggested a possible IRF8-binding cis element between –48 and –56 bp. Consistent with this, the –50 to –56 bp Fancc sequence had homology with an IRF-binding consensus (5′-GAAAAT-3′ compared with the ISRE consensus [5′-GAAANN-3′] and the IRF8-binding Fancf cis element [5′-GAAAGC-3′]) (17, 33). We mutated this sequence in the context of the –56-bp Fancc promoter construct (5′-GAAAAT-3′ to 5′-GAACAT-3′) and found that the mutant construct did not exhibit IRF8-induced promoter activity (Figure 2B).
IRF8 activates a cis element in the proximal Fancc promoter.
(A) The Fancc 5′ flank has conserved consensus sequences for interferon regulatory factor binding. The human (black) and murine (blue) Fancc 5′ flanks were compared for conserved consensus sequences for interferon regulatory factor binding. The identified sequences are indicated in red. Every 50 bp, counting from the transcription start site, are indicated by a black circle. (B) IRF8 activates the Fancc promoter. U937 myeloid cells were cotransfected with reporter constructs containing truncations of the Fancc 5′ flank and a vector to express IRF8 (or control vector). Reporter gene activity was determined with or without RA/DMF treatment. Reporter gene activity that is not significantly different within groups is indicated by a or b. Statistically significant differences with versus without IRF8 overexpression are indicated by *P < 0.01 and **P < 0.01. (C) IRF8 activates a cis element found between –56 and –48 bp of the Fancc promoter. U937 cells were cotransfected with a reporter construct with 3 copies of the –58- to –46-bp sequence of the Fancc promoter linked to a minimal promoter and a vector to express IRF8 (or relevant control vectors). Reporter gene activity was determined with or without RA/DMF. Statistically significant differences with versus without IRF8 overexpression are indicated by *P < 0.01 or ***P < 0.01 and with versus without differentiation by **P < 0.01.
To test the –50- to –56-bp Fancc promoter region for cis element activity, we generated a construct with 3 copies of this Fancc sequence linked to a minimal promoter and luciferase reporter gene. This construct (or empty minimal promoter/reporter vector) was cotransfected into U937 cells with an IRF8 expression vector (or empty control vector), and transfectants were analyzed for reporter activity. We found that activity of this Fancc cis element was significantly increased by differentiation of the transfectants (P < 0.001, n = 6) (Figure 2C) and that IRF8 overexpression significantly increased activity of the Fancc cis element with or without differentiation (P < 0.001, n = 6) (Figure 2C). In contrast, activity of a construct with 3 copies of the mutant form of the Fancc cis element was not significantly different than empty control reporter vector, with or without IRF8 overexpression or differentiation (data not shown).
To determine whether IRF8 interacted with this Fancc cis element, we performed EMSA with a synthetic double-stranded oligonucleotide probe representing the –58- to –46-bp Fancc sequence and nuclear proteins from U937 cells. Some binding assays were incubated with excess unlabeled homologous oligonucleotide, homologous oligonucleotide with a mutation of the ISRE-like sequence, or oligonucleotides with 2 irrelevant Fancc promoter sequences or the IRF8-binding FANCF cis element (17). Other binding assays were preincubated with IRF8 antibody (or control antibody). We found that the –58- to –46-bp Fancc sequence bound a specific protein complex, which was disrupted by IRF8 antibody, and had cross-competitive binding with the IRF8-binding FANCF cis element but not with mutant or irrelevant Fancc sequences (Figure 3A).
IRF8 binds to the proximal Fancc promoter cis element.
(A) IRF8 binds to the –58- to –46-bp sequence of the Fancc promoter in vitro. EMSAs were performed with nuclear proteins from U937 cells and synthetic oligonucleotide probe representing the –56- to –46-bp sequence of the Fancc promoter. Binding assays were incubated with antibodies or double-stranded oligonucleotide competitors, as indicated. The IRF8 complex and free probe are indicated by arrows. (B) IRF8 binds to the Fancc promoter cis element in vivo. Chromatin coimmunoprecipitation was performed with U937 cells and an antibody to IRF8 (or control antibody). Cells were analyzed with or without RA/DMF treatment. Immunoprecipitated chromatin was amplified by quantitative real-time PCR with primers that flanked various sequences in the Fancc 5′ flank. Statically significant difference with versus without differentiation is indicated by *P < 0.01.
We investigated in vivo binding of IRF8 to the Fancc promoter by chromatin immunoprecipitation. In vivo cross-linked chromatin from U937 cells was sheared to generate approximately 200-bp fragments, coprecipitated with an IRF8 antibody (or control antibody), and amplified by real-time PCR using primers that flank the Fancc cis element or irrelevant sequences from the distal Fancc 5’ flank. We found that IRF8 bound specifically to the proximal Fancc promoter (Figure 3B). Binding site occupancy by IRF8 was significantly increased by differentiation of U937 cells (P < 0.0001, n = 3), consistent with transfection data for promoter activity.
Impaired DNA repair in IRF8-deficient myeloid cells is rescued by FANCC. We investigated the contribution of FANCC to impaired DNA repair in IRF8-deficient cells using a reporter-based repair assay. In these studies, the reporter plasmid is treated with mitomycin C (MMC) to generate DNA crosslinks prior to transfection into U937 cells (a TK-luciferase plasmid for the current studies) (17). Decreased reporter activity from MMC-treated plasmid versus untreated plasmid reflects MMC-induced DNA damage in this assay (17). Therefore, conditions that increase reporter activity in cells transfected with MMC-treated plasmid (but not control plasmid) are presumed to increase the efficiency of DNA repair.
We found that reporter activity of MMC-treated plasmid in U937 transfectants was significantly less than that of control plasmid, consistent with our previous studies (17). As in those studies, the difference in reporter activity with versus that without MMC treatment was greater in differentiating transfectants (P < 0.001, n = 3). We also found that expression of IRF8-specific shRNAs significantly decreased activity of MMC-treated reporter plasmid (P < 0.01, n = 3) but not untreated, control plasmid (P = 0.1, n = 3) (Figure 4A). We found that reexpression of either FANCC or FANCF in transfectants with IRF8 knockdown significantly increased activity from MMC-treated reporter plasmid (P < 0.02, n = 3) (Figure 4A). The effect of coexpressing FANCC and FANCF on MMC-treated reporter plasmid activity in cells with IRF8 knockdown was greater than the effect of either alone (P = 0.03, n = 3).
FANCC reexpression rescues DNA repair in IRF8-deficient cells. (A) IRF8 knockdown decreases repair of MMC-damaged plasmid in U937 transfectants, and this is reversed by FANCC and/or FANCF expression. U937 cells were stably transfected with a vector to express an IRF8-specific shRNA or scrambled control shRNA. These cells were cotransfected with a reporter plasmid and a vector to express FANCC, FANCF, FANCC plus FANCF, or empty vector control. Some reporter plasmids were pretreated with MMC to generate DNA crosslinks. Reporter activity was determined in RA/DMF-differentiated transfectants. Statistically significant difference in reporter expression with versus without IRF8 knockdown is indicated by *P < 0.01 and in IRF8-knockdown cells with versus without reexpression of FANCC, FANCF, or both by **P < 0.01 or ***P < 0.01. Statistically significant differences with IRF8 knockdown and reexpression of FANCC or FANCF versus reexpression of both are indicated by #P < 0.01 or ##P < 0.01. (B) Expression of Fancc is decreased in U937 stable transfectants with IRF8 knockdown. U937 stable transfections from the experiments above were analyzed for expression of Irf8 and Fancc mRNA by real-time PCR. Statistically significant differences with versus without IRF8 knockdown are indicated by *P < 0.01 and **P < 0.01.
In control studies, preliminary transfections were performed to identify the maximal amount of FANCC or FANCF expression vector that did not influence activity of the MMC-treated reporter construct in the absence of IRF8 knockdown (data not shown). The identified amount was used in these studies, because the goal was to study effects of expressing FANCC or FANCF specifically on IRF8-induced defects on DNA repair (as opposed to other abnormalities in U937 cells). Neither overexpression of FANCC or FANCF, nor knockdown of IRF8 influenced reporter activity from non-MMC-treated control reporter plasmid. U937 cells that were stably expressing IRF8-specific shRNAs were used for these studies. In other control studies, we found that expression of Fancc mRNA was decreased by IRF8 knockdown, as anticipated (Figure 4B). We previously demonstrated that IRF8 knockdown decreased Fancf mRNA and protein (17).
These studies suggested that decreased expression of FANCC contributes to impaired DNA repair in IRF8-deficient cells. Because of the involvement of IRF8 in the innate immune response, we hypothesized that Fanconi pathway activity might be a required for successful emergency granulopoiesis.
The emergency granulopoiesis response is impaired in FANCC-deficient mice. Bone marrow from Fancc–/– mice has increased susceptibility to MMC-induced DNA damage in vitro and in vivo. These mice do not develop bone marrow failure, dysplasia, or AML in the absence of a DNA-damaging event (34–37), but emergency granulopoiesis has not been investigated in any FA mice. Emergency granulopoiesis is studied in mice by i.p. injection with pathogens or antigen/adjuvant combination (ovalbumin/alum, referred to as Alum) (38). In both models, there is an increase in IL-1β and in IL-1β–dependent production of G-CSF (38–41). Pathogen-based studies are characterized by death of the animals, but mice recover completely from Alum injection. Since we were interested in studying multiple episodes of emergency granulopoiesis, we chose the latter approach.
In preliminary studies with WT mice, we determined that peripheral granulocytosis was maximal 2 weeks after Alum injection and resolved by 4 weeks (Figure 5A). We identified mild anemia in these mice during the first 2 cycles of Alum injection, which resolved with subsequent treatment (Figure 5B). Based on these results, we embarked on an every-4-week injection program. We injected Alum or saline control (10 mice per group) into the peritoneal cavity of WT, Fancc+/–, and Fancc–/– mice on day 0, and complete blood counts were performed every 2 weeks. We found that Alum injection did not induce granulocytosis in Fancc+/– or Fancc–/– mice at 2 weeks (Figure 5A). Instead, FANCC-knockout mice developed progressive granulocytopenia with repeated cycles of Alum injection. This effect was profound in Fancc–/– mice and significantly less in Fancc+/– mice (P < 0.01, n = 8). We found that FANCC-knockout mice developed progressive anemia with successive cycles of Alum injection (Figure 5B). Anemia was severe in Fancc–/– mice and was the likely cause of death in these animals.
FANCC-deficient mice exhibit an abnormal emergency granulopoiesis response. (A) Fancc+/– and Fancc–/– mice fail to exhibit granulocytosis upon Alum injection. WT, Fancc+/–, and Fancc–/– mice were injected with saline or Alum in the peritoneal cavity every 4 weeks. Some mice were pretreated with IL-1R antagonist (anakinra [Kineret]) 24 hours prior to and following Alum injection. Peripheral blood granulocyte counts were determined every 2 weeks. Statistically significant differences that developed over time are indicated by *P < 0.01, **P < 0.01, or ***P < 0.01. (B) FANCC-deficient mice exhibit progressive anemia with repeated Alum injection. Mice described above were also evaluated for Hgb concentration every 2 weeks. Statistically significant differences that developed over time are indicated by *P < 0.01 and **P < 0.01. (C) IL-1β and G-CSF production are similar in Alum-injected WT and Fancc–/– mice. Serum levels of IL-1β and G-CSF were determined in WT or Fancc–/– mice injected with Alum or saline. Statistically significant differences with versus without Alum are indicated by *P < 0.01, **P < 0.01, #P < 0.01, or ##P < 0.01. (D) Lymphopenia occurs in WT and Fancc–/– mice after Alum injection. The percentage decrease in lymphocyte counts after Alum injection were determined in WT and Fancc–/– mice, with versus without anakinra pretreatment. Lymphocyte counts were not altered by saline injection (data not shown). EG, emergency granulopoiesis.
We performed control studies to verify that Alum injection had an equivalent influence on circulating levels of IL-1β and G-CSF in WT and Fancc–/– mice. In initial studies, we found that the concentration of these cytokines was maximal 4 days after injection in either WT or Fancc–/– mice (data not shown). We found that Alum injection significantly increased the serum concentrations of both IL-1β and G-CSF in WT and Fancc–/– mice (P < 0.001, n = 3) (Figure 5C). The concentrations of these cytokines were not significantly different in Alum-treated WT versus Fancc–/– mice (P = 0.6 for IL-1β and P = 0.3 for G-CSF; n = 3).
Injection with Alum also results in lymphopenia in these mice, which is maximal at 24 to 48 hours. A number of cytokines were examined by other investigators to identify a mechanism for this observation, and increased TNF-α was found to be the cause of lymphopenia in this murine model (41). We observed an equivalent TNF-α effect on circulating lymphocytes in WT and Fancc–/– mice (decrease of 53.1% ± 3.6% in WT mice and 57.7% ± 1.6% in Fancc–/– mice; P = 0.4, n = 4) (Figure 5D).
Fancc–/– mice exhibited significant (P < 0.001) mortality with multiple cycles of Alum injection in comparison with that of WT mice (80% of mice did not survive the treatment period) (Figure 6A). In contrast, 80% of Fancc+/– and 100% of WT Alum-injected mice survived the treatment period. There were no deaths among the saline-injected cohorts of WT, Fancc+/–, or Fancc–/– mice. In the few Fancc–/– mice that did not succumb during repeated cycles of Alum injection, increasing numbers of myeloid blasts appeared in the circulation (Figure 6, B and C). However, no myeloid blasts were found in the circulation of WT or Fancc+/– mice, even after 4 cycles of Alum injection, and no saline-injected mice of any type exhibited circulating myeloid blasts during the course of the experiment.
Abnormal myelopoiesis develops in Fancc–/– mice after multiple cycles of Alum injection.
(A) Survival of Fancc–/– mice is low during multiple cycles of Alum injection. Fancc–/–, Fancc+/–, and WT mice were injected with Alum or saline every 4 weeks. The percentage of mice surviving during the treatment period was determined. All mice in the saline group survived during the treatment period. Curves for WT and Fancc–/– mice were significantly (P < 0.01) different by log-rank analysis. (B) Immature myeloid cells appear in the circulation of Fancc–/– mice after multiple Alum injections. Peripheral blood from the mice above was analyzed every 4 weeks for immature circulating myeloid cells (blasts). Statistically significant difference in myeloid blasts over time in Alum-injected mice is indicated by *P < 0.01 and with versus without Alum injection by **P < 0.01. No myeloid blasts were observed in WT or Fancc+/– mice during treatment. (C) Photomicrograph of immature myeloid cells in the circulation of Fancc–/– mice. Peripheral blood from a Fancc–/– mouse after 2 Alum injection cycles was analyzed microscopically (original magnification, ×40). Myeloid blasts are indicated by arrows, and a lymphocyte is indicated by an asterisk.
In additional control studies, we investigated IRF8 expression in Fancc–/– murine bone marrow. For these studies, cells from WT or Fancc–/– mice were cultured under GMP conditions, and expression of IRF8 was determined by real-time PCR, with or without IL-1β treatment. We found no significant difference in IRF8 expression in WT versus Fancc–/– cells under either condition (P > 0.2, n = 3).
IL-1R blockade protects Fancc–/– mice during emergency granulopoiesis.
Since IL-1β is a key mediator of emergency granulopoiesis, we investigated the effect of IL-1R blockade on the consequences of Alum injection in FANCC-knockout mice. For these studies, we used an IL-1R antagonist that is in use in for human autoimmune disease (anakinra [Kineret]) (42, 43). WT, Fancc+/–, and Fancc–/– mice were pretreated with anakinra 24 hours before Alum injection and an additional dose was given 24 hours later (10 mice per group). We found that anakinra blocked granulocytosis in Alum-treated WT mice, as anticipated (P < 0.001 for maximal granulocytes) (Figure 5A). WT mice treated with the Alum-anakinra combination also did not exhibit anemia during the initial treatment period (Figure 5B). Mortality of WT mice was not increased by IL-1R antagonist treatment, with or without Alum injection.
We found that pretreatment with IL-1R antagonist prevented granulocytopenia in Alum-treated Fancc+/– and Fancc–/– mice (Figure 5A). IL-1R blockade also significantly decreased the development of anemia in Fancc–/– mice during multiple cycles of Alum injection (Figure 5B). Perhaps more importantly, none of the anakinra-treated Fancc+/– or Fancc–/– mice died during 3 cycles of Alum treatment.
Since IL-1R blockade would not be expected to influence TNF-α in this model, we investigated the effect of anakinra on lymphocyte counts in these mice, as above. Consistent with the specificity of this agent for the IL-1R, we found that lymphopenia occurred in Alum-injected, anakinra-treated WT and Fancc–/– mice (decrease of 54.4% ± 3.8% in WT mice and 55.7% ± 7.2% in Fancc–/– mice; P = 0.6, n = 4) (Figure 5D). These values were not significantly different than the lymphopenia seen in Alum-treated mice in the absence of anakinra (P = 0.8, n = 4).
Apoptosis in Fancc–/– bone marrow during failed emergency granulopoiesis.
We investigated the effect of Alum injection on various cell populations in the bone marrow of WT and FANCC-knockout mice. For these studies, WT, Fancc+/–, or Fancc–/– mice were treated with a single i.p. injection of Alum or saline and sacrificed 2 weeks later. We found that the total number of bone marrow mononuclear cells increased significantly after injection of Alum in WT mice but not Fancc+/– or Fancc–/– mice (Figure 7A). In fact, the total number of bone marrow mononuclear cells in Fancc–/– mice actually decreased after Alum injection.
Alum injection does not expand myeloid progenitors or differentiating granulocytes in Fancc–/– mice.
(A) Alum increases total bone marrow cells in WT but not FANCC-deficient mice. WT, Fancc+/–, and Fancc–/– mice were injected with Alum or saline. Bone marrow was harvested 2 weeks later, and total bone marrow mononuclear cells were counted. Statistically significant differences with versus without Alum are indicated by *P < 0.01 or ***P < 0.01 and with versus without FANCC-knockout by **P < 0.01. (B) Alum decreases SCA1+ cells and increases CD34+ in WT, but not FANCC-deficient, mice. Bone marrow from the mice above was analyzed by flow cytometry for immature (SCA1+CD34–) or committed myeloid progenitors (SCA1–CD34+GR1–). Statistically significant differences with versus without Alum are indicated by *P < 0.01, **P < 0.01, or #P < 0.01 and with versus without FANCC-knockout by ***P < 0.01. (C) Alum increases differentiating granulocytes in the bone marrow of WT mice but not FANCC-deficient mice. The bone marrow above was analyzed for differentiating myeloid progenitors (CD34–GR1+). Statistically significant differences with versus without Alum are indicated by *P < 0.01 and with versus without FANCC-knockout by **P < 0.01. (D) Bone marrow from FANCC-deficient mice is abnormal. Sternal bone marrow from mice above was examined microscopically (original magnification, ×40). Areas of differentiating granulocytes in WT bone marrow after Alum are encircled. A dysplastic megakaryocyte in control Fancc–/– bone marrow is indicated by an arrow, and hypersegmented granulocytes are indicated by asterisks. Hyaline debris in Fancc–/– bone marrow from Alum-treated mice is indicated by an arrow, areas of degrading cells are encircled, and abnormal granulocyte progenitors are indicated by asterisks.
We used flow cytometry to identify populations of immature progenitors (SCA1+CD34–GR1–), committed progenitors (SCA1–CD34+GR1–), or differentiating phagocytes (SCA1–CD34–GR1+) in the bone marrow of these mice. In WT mice, Alum injection decreased the SCA1+ population and increased the CD34+ (Figure 7B) and GR1+ populations (Figure 7C) (P < 0.02, n = 4), consistent with the physiology of emergency granulopoiesis. In contrast, Alum injection did not increase CD34+ cells in Fancc+/– mice and actually decreased the number of CD34+ cells in Fancc–/– mice (Figure 7B). Alum treatment also did not increase the number of GR1+ cells in Fancc+/– or Fancc–/– murine bone marrow (Figure 7C).
Histological examination of hematoxylin and eosin–stained sternal bone marrow from these mice was performed to confirm these results. We found that WT murine bone marrow was filled with maturing neutrophils 2 weeks after Alum injection, as anticipated (Figure 7D). In contrast, Alum injection did not increase the abundance of mature granulocytes in Fancc–/– bone marrow (Figure 7D). Instead, an increase in cells with pyknotic nuclei, enlarged myeloid progenitor cells with disrupted nuclei, and areas of cellular debris were observed. There were many areas of hyalinized material in Fancc–/– bone marrow after Alum treatment, suggestive of organizing cellular debris. In non-Alum-injected Fancc–/– bone marrow, we noted mononucleate megakaryocytes and hypersegmented neutrophils, indicating mild bone marrow dysplasia at baseline in these mice.
To determine whether apoptosis of bone marrow cells contributed to failed emergency granulopoiesis in Fancc–/– mice, we performed TUNEL assays on sternal bone marrow from WT or Fancc–/– mice 2 weeks after Alum injection. We found a significant increase in the number of TUNEL-positive cells in Alum-treated Fancc–/– mice in comparison with that in Alum-treated WT mice or saline-treated WT or Fancc–/– mice (analyzed per high-power field; Figure 8A). This increase was more pronounced than the absolute number indicates, because the number of bone marrow cells per high-power field in Alum-treated WT mice was significantly greater than that in Alum-treated Fancc–/– mice (see Figure 7A). Visual inspection of sternal bone marrow samples from Alum-treated Fancc–/– mice revealed clusters of apoptotic cells that were not apparent in saline-injected Fancc–/– mice or WT mice under either condition (Figure 8B).
Alum injection induces apoptosis in the bone marrow of FANCC-deficient mice. (A) Alum injection increases apoptosis in the bone marrow of FANCC-deficient, but not WT, mice. TUNEL assays were performed on sternal bone marrow from WT and Fancc–/– mice 2 weeks after i.p. injection with Alum or saline. Positive cells were counted per high-power field (hpf). Statistically significant differences in cell numbers in WT versus Fancc–/– bone marrow are indicated by *P < 0.01. (B) Bone marrow from FANCC-deficient mice has increased apoptosis by TUNEL assay. Photomicrographs (original magnification, ×40) were obtained from the sternal bone marrow samples, described above. (C) Hematopoietic stem and myeloid progenitor cells are apoptotic in the bone marrow of Alum-injected Fancc–/– mice. Bone marrow from WT or Fancc–/– mice was harvested 2 weeks after injection with Alum or saline and analyzed by flow cytometry to identify the percentage of Annexin V–positive cells in the SCA1+, CD34+, or GR1+ populations. Statistically significant differences in the percentages of Annexin V–positive cells in WT versus Fancc–/– bone marrow populations are indicated by *P < 0.01, **P < 0.01, or ***P < 0.01.
We further analyzed bone marrow from Alum-injected mice to identify cell populations that were undergoing apoptosis. For these studies, bone marrow was obtained from WT or Fancc–/– mice 2 weeks after Alum injection and analyzed by flow cytometry for surface marker expression and Annexin V staining. We found that the percentage of apoptotic SCA1+, CD34+, and GR1+ cells in the bone marrow of Alum-treated Fancc–/– mice was greater than that in WT mice (respectively, P = 0.01, P = 0.04, P = 0.001; n = 3) (Figure 8C). These differences were likely greater than calculated, based on the decreased number of CD34+ and GR1+ cells in Fancc–/– bone marrow versus the increased number of these cells in WT mice after Alum treatment (i.e., there were likely more dead cells discarded during processing or analysis of Fancc–/– bone marrow).
Function of bone marrow progenitors from Alum-treated Fancc–/– mice.
We hypothesized that failed episodes of emergency granulopoiesis resulted in damage to HSCs and bone marrow progenitor cells. We investigated this in bone marrow transplantation experiments. For these studies, bone marrow was harvested from Fancc–/– mice 2 weeks after injection with Alum or saline. LIN–SCA1+ cells were isolated and transplanted into lethally irradiated WT mice (5 × 105 cells, after depletion of Annexin V+ cells; cells were ~90% SCA1+ by flow cytometry). Mice were followed with weekly peripheral blood counts. We found that reconstitution of hematopoiesis was significantly delayed in mice that were transplanted with SCA1+ cells from Alum-treated Fancc–/– mice in comparison with transplantation with the same number of SCA1+ cells from saline-injected Fancc–/– mice. This was reflected in significantly fewer circulating neutrophils (P < 0.02, n = 3) (Figure 9A), decreased hemoglobin (Hgb) concentration (P < 0.001, n = 3) (Figure 9B), and a reduced number of circulating platelets (P < 0.01, n = 3) (Figure 9C).
Hematopoietic recovery is delayed in mice transplanted with SCA1+ cells from Alum-treated Fancc–/– mice versus control Fancc–/– mice.
(A) Circulating neutrophils increase more slowly in mice transplanted with SCA1+ bone marrow cells from Alum-treated versus control Fancc–/– mice. Fancc–/– mice were injected with Alum or saline, and bone marrow was harvested 2 weeks later. LIN–SCA1+ cells were transplanted into lethally irradiated WT mice, and peripheral neutrophil counts were determined each week. Statistically significant differences with transplant from Alum- versus saline-treated donors is indicated by *P < 0.01 or **P < 0.01. (B) Hgb concentration increases more slowly in mice transplanted with SCA1+ bone marrow cells from Alum-treated versus control Fancc–/– mice. Hgb concentrations were determined for the mice above. Statistically significant differences with transplant from Alum- versus saline-injected donors are indicated by *P < 0.01 or **P < 0.01. (C) Platelet counts increase more slowly in mice transplanted with SCA1+ bone marrow cells from Alum-treated versus control Fancc–/– mice. Platelet counts were determined for the mice above. Statistically significant differences with transplant from Alum- versus saline-injected donors are indicated by *P < 0.01 or **P < 0.01.
Bone marrow was obtained from these mice 6 weeks after transplantation for further analysis. We found that the number of bone marrow mononuclear cells was significantly lower in mice transplanted with SCA1+ cells from Alum-treated Fancc–/– mice in comparison with that in saline-treated Fancc–/– mice (P = 0.004, n = 3) (Figure 10A). The number of LIN–SCA1+ cells was also significantly lower in the mice transplanted with cells from Alum-treated versus saline-treated Fancc–/– mice (P = 0.007, n = 3) (Figure 10B). To confirm that these SCA1+ cells originated from the Fancc–/– transplanted population, we analyzed genomic DNA from LIN–SCA1+ cells for the presence of the antibiotic resistance cassette used to generate the FANCC knockout (by real-time PCR). An irrelevant gene (ARIH2) was used as a control for total genomic DNA in the sample. We found that most SCA1+ cells present in the bone marrow of these mice 6 weeks after transplantation were Fancc–/– cells (92.0% ± 8.1% for recipients of bone marrow from non-Alum-treated donors and 91.3% ± 5.8% for Alum-treated donors recipients; P = 0.9, n = 3).
Fewer SCA1+ cells are found in the bone marrow after transplantation with SCA1+ cells from Alum-treated Fancc–/– mice versus saline-treated Fancc–/– mice.
(A) Fewer bone marrow mononuclear cells are present in mice transplanted with SCA1+ cells from Alum-injected Fancc–/– mice versus saline-injected Fancc–/– mice. Fancc–/– mice were injected with Alum or saline i.p., and bone marrow was harvested 2 weeks later. LIN–SCA1+ cells were transplanted into irradiated WT recipients. Bone marrow was harvested 6 weeks after transplantation, and total bone marrow mononuclear cells were counted. Statistically significant difference between cell numbers after transplantation with cells from Alum-treated versus control Fancc–/– mice is indicated by *P < 0.01. (B) Fewer SCA1+ cells are present in mice transplanted with SCA1+ cells from Alum-treated Fancc–/– mice versus saline-treated Fancc–/– mice. Bone marrow cells above were analyzed by flow cytometry for SCA1+ cells. Statistically significant differences between cell numbers after transplantation with cells from Alum-treated versus control Fancc–/– mice are indicated by *P < 0.01.
We found that treatment of myeloid progenitor cells with emergency granulopoiesis–related cytokines (IL-1β and G-CSF) resulted in IRF8-dependent transcription of the gene encoding FANCC. We also found an abnormal response to emergency granulopoiesis challenge in FANCC-deficient mice. Specifically, Fancc–/– mice failed to exhibit granulocytosis but instead had progressive neutropenia and anemia with repeated challenge. This failure of the emergency granulopoiesis response was associated with apoptosis of bone marrow HSCs and differentiating myeloid progenitors. Fancc–/– mice that survived 3 cycles of attempted emergency granulopoiesis exhibited a new onset of leukocytosis with immature myeloid cells. Therefore, our studies suggested that FANCC was an essential component of the emergency granulopoiesis response and provided a previously undescribed mechanism for bone marrow failure in FA.
IRF8 plays a role in the innate immune response by regulating a set of phagocyte effector genes, including genes encoding the rate-limiting phagocyte NADPH-oxidase proteins (2, 3). In the current studies, we identified transcriptional activation of FANCC by IRF8 as an additional component of the innate immune response. Our studies suggest that FANCC expression contributes to Fanconi pathway activation during infectious challenge. Fanconi core components are a logical control point for pathway activity, since assembly and DNA localization of the core complex leads to ubiquitination of FANCD2 and FANCI, a process that initiates DNA repair.
We found enrichment of FANCC in the chromatin fraction of murine myeloid progenitor cells upon treatment with IL-1β. This was consistent with our hypothesis regarding Fanconi pathway activation during emergency granulopoiesis. We found that FANCJ and RAD51 were also enriched in the chromatin fraction in IL-1β–treated cells. RAD51 is associated with the HRR DNA repair mechanism, and FANCJ participates in both HRR and TLS (18–20). Both mechanisms contribute to replication fork recovery, so this data is also consistent with our hypothesis. Studies are ongoing in the laboratory to clarify DNA repair mechanisms that are activated during emergency granulopoiesis
We hypothesized that impaired Fanconi pathway activity in IRF8-deficient mice accelerates accumulation of mutations during the stress of emergency granulopoiesis, contributing to development of AML. This was consistent with observations that Irf8–/– mice do not exhibit emergency granulopoiesis, but repeated infectious challenge accelerates progression to AML in these mice (our unpublished observations). To investigate this further, we tested a murine FA model for integrity of the emergency granulopoiesis response. We found that Fancc–/– mice did not exhibit leukocytosis in response to emergency granulopoiesis stimuli but instead developed progressive neutropenia, profound anemia, and death. The few Fancc–/– mice that survived 3 cycles of emergency granulopoiesis developed leukocytosis with immature cells. This was similar to human subjects who survive the bone marrow failure phase of FA.
Fancc+/– mice also had an impaired granulocytosis response and developed mild anemia. These results suggested that human subjects with heterozygous Fanconi deficiency may also have an impaired emergency granulopoiesis response. This would not be anticipated to result in a profound phenotype in these individuals, since studies have shown that as little as 10% normal neutrophil function can protect from recurrent infection (44). However, study of FA carriers, and their clinical responses to infection, might be of interest.
In normal bone marrow, IL-1β induces proliferation of HSCs and committed myeloid progenitor cells during the emergency granulopoiesis response, associated with S-phase shortening. In contrast, we found increased apoptosis of HSCs and differentiating myeloid progenitor cells in the bone marrow of Fancc–/– mice after emergency granulopoiesis stimuli. Indeed, the majority of differentiating myeloid progenitor cells were apoptotic, consistent with an absence of granulocytosis in the bone marrow or circulation in Alum-treated Fancc–/– mice. We also found HSC dysfunction in Fancc–/– mice after even a single cycle of in vivo stimulation with Alum. These results support our hypothesis that failed episodes of emergency granulopoiesis contribute to bone marrow failure in FA.
In Fancc–/– mice, profound anemia was common after 2 cycles of Alum stimulation. Since IL-1β suppresses erythroid progenitor proliferation, IL-1β–induced suppression followed by an unsuccessful compensatory proliferation of erythroid progenitors may contribute to progressive anemia in our studies. The inflammatory mediators IFN-γ and TNF-α have a greater proapoptotic effect in FANCC-deficient bone marrow in comparison with that in normal bone marrow (45, 46). Mutations that reverse the susceptibility of Fancc–/– cells to cytokine-induced programmed cell death may contribute to clonal progression in FA. These are topics for future studies.
Additionally, these inflammatory cytokines may impact bone marrow failure during the emergency granulopoiesis response. Previous investigators determined that Alum injection does not increase IFN-γ levels, but production of TNF-α is increased in these mice (41, 47). Therefore, we considered the possibility that TNF-α influenced apoptosis of bone marrow cells in our studies. Other investigators determined that TNF-α production is maximal 24–48 hours after Alum injection (41). In elegant studies, these investigators also demonstrated that increased TNF-α is directly causal of lymphopenia observed in these mice 24–48 hours after Alum injection (41). We confirmed these results in studies, as described above (and in data not shown). Since TNF-α production is not dependent upon increased IL-1β in Alum-injected mice (which occurs later), pretreatment with an IL-1R antagonist would not be anticipated to influence effects of TNF-α on these mice (41). Consistent with this, we found that lymphopenia occurred equivalently after Alum injection in WT and Fancc–/– mice, with or without anakinra pretreatment. These results suggested the possibility that blocking TNF-α might add to anakinra effects and further protect HSCs and progenitor cells from apoptosis during emergency granulopoiesis in Fancc–/– mice. This will be a topic for future investigations.
It is of interest that IL-1β is increased in human subjects with FA (48). This may imply subclinical, ongoing infection in subjects with FA, resulting in chronic production of this cytokine. Our current studies suggest that such subclinical infections may produce ongoing bone marrow stress. In this case, treatment with prophylactic antibiotics might be useful in human subjects with FA. We tested IL-1R blockade as an approach to protecting Fancc–/– mice from bone marrow failure during repeated emergency granulopoiesis challenge. We used an IL-1R antagonist (anakinra) that is FDA approved for human subjects with autoimmune disorders and has been previously used in murine models (43, 49). We found that treatment with anakinra blocked emergency granulopoiesis in WT mice and ameliorated bone marrow failure in Alum-treated FANCC-knockout mice. Our studies imply a potential benefit to IL-1R blockade or prophylactic antibiotics to prevent or delay these adverse consequences in human subjects with FA.
Protein expression vectors. The IRF8 cDNA was obtained from Ben Zion-Levi (Technion, Haifa, Israel) and subcloned into the pcDNAamp mammalian expression vector (Stratagene). The FANCC cDNA was obtained from U937 cells by reverse transcription and real-time PCR. The PCR product was sequenced to assure that no mutations were present. IRF8-specific shRNAs were designed and subcloned into the pLKO expression vector, as previously described (15, 16). These shRNAs consistently reduce IRF8 expression in U937 cells by 70% (15, 16).
Fancc reporter vectors. 5′ flank Fancc gene sequences were obtained from U937 genomic DNA by PCR. Fragments were sequenced on both strands to verify identity with reported sequences. Constructs were generated with the pGL3-basic vector (Promega) using 1.5 kb, 1.0 kb, 440 bp, 152 bp, 56 bp, and 48 bp of Fancc 5′ flank.
Other reporter constructs were generated with an artificial promoter/reporter vector with 3 copies of an IRF8-binding cis element from the Fancc promoter (–58 to –46 bp; WT or mutant as described below) using the pGL3-promoter vector (Promega).
Oligonucleotides were custom synthesized by MWG Biotech. WT and mutant oligonucleotide probes representing the –58 to –46 bp in the Fancc sequence were used for EMSAs: oligo (5′-GCAATTTTCCCG-3′), mutant oligo (5′-GCCCGGTTCCCG-3′, with bold representing the mutation). Competitor oligonucleotides from the Fancf promoter have been previously described (17).
Irf8+/– mice were obtained from Keiko Ozato (NIH, Bethesda Maryland, USA) (5).
Fancc+/– mice were a gift from D. Wade Clapp (Indiana University, Indianapolis, Indiana, USA) (34–36).
Bone marrow harvest and culture. Bone marrow mononuclear cells were obtained from the femurs of WT or Irf8–/– C57/BL6 mice (5). CD34+ cells were separated using the Miltenyi magnetic bead system (Miltenyi Biotechnology). Bipotential GMP cells were cultured (2 × 105 cells/ml) for 48 hours in DME media supplemented with 10% fetal calf serum, 1% pen-strep, 10 ng/ml murine GM-CSF (R&D Systems), 10 ng/ml murine recombinant IL-3 (R&D Systems), and 100 ng/ml SCF (R&D Systems). Cells were either maintained in GM-CSF, IL-3, and SCF for 48 hours or stimulated with G-CSF or IL-1β.
Emergency granulopoiesis. WT, Fancc+/–, or Fancc–/– mice were injected i.p. with Alum or saline control for 4 weeks (10 mice per group). Alum was prepared as described and a 0.5 ml volume was injected i.p. (38). Some cohorts of mice were treated with anakinra (150 mg/kg; Amgen) 24 hours before and 72 hours after Alum (10 mice per group).
Analysis of peripheral blood and bone marrow. Peripheral blood was obtained from the tail vein of each mouse for 2 weeks, and complete blood counts (with leukocyte differential) were determined using an automated cell counter. Myeloid blast counts were verified by hand counting of May-Grunwald-Giemsa–stained peripheral blood smears (blinded for the results of the automated differential; 300 cells counted per slide). Mice were sacrificed if they developed leukocytosis >100,000 cells/ml or a Hgb concentration of ≤6.0. Images of peripheral blood were captured by light microscopy (×40 magnification).
Sternal bone marrow samples were decalcified and stained using hematoxylin and eosin, according to standard techniques, by the Pathology Core Facility of the Robert H. Lurie Comprehensive Cancer Center. Light microscopy was performed, and digital images were captured (×40 magnification).
Serum IL-1β and G-CSF determination. Serum was obtained from the tail veins of WT or Fancc–/– mice 2 weeks after i.p. injection with saline or Alum. Serum was analyzed by IL-1β or G-CSF ELISA, and cytokine concentrations were calculated using a commercially available kit (Promega, E-max ImmunoAssay System) according to manufacturer’s instructions.
Murine bone marrow transplantation. Bone marrow was harvested from Fancc–/– mice 2 weeks after injection of Alum or saline (as described above). LIN–SCA1+ cells were selected from the population of total bone marrow mononuclear cells using magnetic bead–conjugated antibodies (according to manufacturer’s instructions; Miltenyi Biotech) (6, 27). Viable cells were obtained by negative selection using Annexin V–conjugated magnetic beads (according to manufacturer’s instructions; Miltenyi Biotech). Lethally irradiated WT C57 Black 6 mice were injected (retro-orbital) with LIN–SCA1+ cells (5 × 105 cells plus 105 SCA1– WT bone marrow helper cells).
In situ TUNEL assay. To detect apoptosis of mouse sternum in situ, the labeling reaction was performed using the TACS 2 TdT/DAB in site apoptosis kit according manufacturers’ instructions (Trevigen). Briefly, mouse sterna were fixed in formalin for at least 24 hours, decalcified, and then cut into 4-μm sections. Paraffin was removed prior to labeling. After DAB staining, slides were counterstained with eosin staining solution. Tissue sections from 3 mice in each group were used for TUNEL assay, with the total of 12 mice (WT saline control, WT Alum-treated, Fancc–/– saline control, and Fancc–/– Alum-treated mice). Ten high-powered fields (at ×40) were counted for each sample for positive staining.
Flow cytometry assay. WT or Fancc–/– mice were injected i.p. with Alum, and bone marrow was obtained 2 weeks later. Bone marrow cells were washed with PBS, counted, and labeled with anti-mouse FITC-conjugated antibodies to SCA1 (Ly-6A/E), CD34, or GR1 (Ly-6G) (eBioscience). Apoptosis in these cells was assessed by flow cytometry using Annexin V-PE Apoptosis Detection Kit I according to manufacturer’s instructions (BD Pharmingen).
Quantitative real-time PCR
RNA was isolated using the TRIzol reagent (Gibco-BRL) and tested for integrity by denaturing gel electrophoresis. Primers were designed with Applied Biosystems software, and real-time PCR was performed using SYBR green according to the “standard curve” method. For all real-time PCR experiments, at least 3 independent samples were evaluated in triplicate.
Results for mRNA expression were normalized to both 18S and actin. No significant difference was found with these 2 genes, and results normalized to 18S are shown. For evaluation of Fancc, Fancf and Irf8 mRNA abundance in murine bone marrow cells, cDNA from WT cells that were cultured in GM-CSF, IL-3, and SCF was used to generate the standard curve. For evaluation of these messages in human myeloid cell lines, cDNA from U937 cells that were cultured under standard conditions was used. Results for chromatin immunoprecipitation were normalized to nonprecipitated (control) lysate as input DNA. For these studies, genomic DNA was used to generate the standard curve.
Myeloid cell line transfections and assays
Myeloid cell lines. The human myelomonocytic leukemia cell line U937 (32) was obtained from Andrew Kraft (Hollings Cancer Center, University of South Carolina, Charleston, South Carolina, USA). Cells were maintained as described previously (14–17).
Stable transfectants. U937 cells (32) were transfected by electroporation with equal amounts of an IRF8 expression vector or empty vector (IRF8/pcDNAamp or pcDNAamp) plus a vector with a neomycin phospho transferase cassette (pSRα) (30 μg each). Stable pools of cells were selected in G418 (0.5 mg/ml). At least 3 independent pools of stable transfectants were selected and analyzed.
Fancc reporter assays. U937 cells (32 × 106/ml) were transfected with vectors to express IRF8 or control (50 μg). Cells were cotransfected with a firefly luciferase reporter construct with various sequences from the Fancc 5′ flank (20 μg, using the pGL3 vector from Promega) and a CMV/renilla luciferase reporter (10 μg, for transfection efficiency). Empty reporter vector was the control in these experiments.
In other experiments, U937 cells were cotransfected with an artificial promoter construct with 3 copies of the –58- to –46-bp Fancc promoter sequence (WT or mutant, as described above) linked to a minimal promoter and firefly luciferase reporter (or control vector without Fancc sequence), a vector to express IRF8 (or control vector), and a CMV promoter/renilla luciferase vector. Reporter assays were performed using the dual luciferase reporter system according to manufacturer’s instructions (Promega) (14).
DNA repair assays. TK-luciferase reporter vector (Promega) was treated with MMC to generate DNA crosslinks, as previously described (17). U937 cells were stably transfected with a vector to express IRF8-specific shRNAs or with scrambled control vectors. These cells were transiently transfected with reporter vector (with or without MMC pretreatment) and a vector to express FANCC, FANCF, both, or empty vector control. Reporter assays were performed with differentiation with RA/DMF. Results were normalized by cotransfecting with an internal control reporter plasmid (CMV-β-galactosidase).
In vitro DNA-binding assays
Isolation of nuclear proteins. Nuclear proteins were extracted from U937 cells by the method of Dignam with modification, as described previously (17).
EMSAs. Oligonucleotides probes were prepared and EMSAs were performed, as described previously (17). For binding reactions with IRF8 antibody, disruption of the complex (not supershift) was anticipated, based on the location of the epitopes used for antibody production. Binding competition studies were performed with 200-fold molar excess double-stranded synthetic oligonucleotides. For all experiments, at least 3 batches of nuclear proteins were tested in 2 independent experiments. A representative study is shown. Integrity of the nuclear proteins and equality of protein loading are determined in EMSA with a probe representing a classical CCAAT box from the promoter of the α globin gene.
In some experiments, cells were lysed in SDS-sample buffer, as previously described (6, 17). In other experiments, cells were fractionated into the chromatin-enriched versus soluble fractions, as previously described (31). For these studies, cells were lysed in fractionation buffer (10 mM PIPES [pH 6.8], 0.1 M NaCl, 5 mM MgCl2, 1 mM EGTA, 1 mM EDTA, 0.3 M sucrose, 1 mM PMSF, 1 μg/ml leupeptin, 1 μg/ml aprotinin, and 0.1% Triton X-100) for 5 minutes on ice. Lysates were centrifuged at 1,500 g, and the supernatant (soluble) fraction was recovered. The pellet (chromatin enriched) was resuspended in fractionation buffer (supplemented to 0.25 M NaCl) and sonicated prior to loading on SDS-PAGE. Western blots were serially probed with antibodies as indicated. Two independent experiments were performed, and a representative blot is shown.
Genomic sequence analysis
Conserved genomic sequences and consensus sequences for interferon regulatory factor DNA-binding were identified using VISTA software (Genomics Division of the Lawrence Berkeley National Laboratory, Berkeley, California, USA) (50, 51).
Statistical significance was determined by unpaired, 2-tailed Student’s t test (to compare 2 samples), ANOVA (to compare more than 2 samples), or log-rank analysis (to analyze survival curves) using SigmaPlot and SigmaStat software. P values of less than 0.04 were considered statistically significant. In all of the graphs, error bars represent ± SEM.
Animal studies were performed according to a protocol approved by the Animal Care and Use Committees of Northwestern University and Jesse Brown VA Medical Center.
We would like to thank D. Wade Clapp for his gift of Fancc+/– mice and for helpful discussions. We would also like to thank Amgen for providing anakinra (Kineret) for these studies. This work was supported by a research grant from the Fanconi Anemia Research Fund, VA Merit Review, and NIH-HL088747 (to E.A. Eklund).
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