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Bermans J. Iskandar, Elias Rizk, Brenton Meier, Nithya Hariharan, Teodoro Bottiglieri, Richard H. Finnell, David F. Jarrard, Ruma V. Banerjee, J.H. Pate Skene, Aaron Nelson, Nirav Patel, Carmen Gherasim, Kathleen Simon, Thomas D. Cook, Kirk J. Hogan
Published in Volume 120, Issue 5
J Clin Invest. 2010; 120(5):1603–1616 doi:10.1172/JCI40000
Abstract | Full text | PDF
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Figure 11
Combined spinal cord and peripheral nerve injury increases methylation of the Gadd45a promoter, and FA increases methylation further in a biphasic fashion in 12 of 18 CpG sites.

The spinal cords of animals subjected to combined spinal cord and left sciatic nerve injury (SCSN) and increasing i.p. concentrations of FA were removed for analysis. The percentage of methylation at each of 18 CpG sites of the Gadd45a promoter was measured in triplicate using pyrosequencing. Note the biphasic response to FA in 12 of the sites studied. Most of the missing data on the graphs are caused by failed analysis by both software and manual analysis. For the samples with no data on any of the CpG sites, this is caused by failed PCR. Overall, the quadratic term in the dose-response models was statistically significant (P = 0.0001; n = 3), confirming that there is a U-shaped dose-response to the folate dose. There is no evidence of differential dose responses among sites (P = 0.8), although power is low for identifying specific CpG sites with differing dose responses.