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Ania Skowera, Richard J. Ellis, Ruben Varela-Calviño, Sefina Arif, Guo Cai Huang, Cassie Van-Krinks, Anna Zaremba, Chloe Rackham, Jennifer S. Allen, Timothy I.M. Tree, Min Zhao, Colin M. Dayan, Andrew K. Sewell, Wendy Unger, Jan W. Drijfhout, Ferry Ossendorp, Bart O. Roep, Mark Peakman
Published in Volume 118, Issue 10
J Clin Invest. 2008; 118(10):3390–3402 doi:10.1172/JCI35449
Abstract | Full text | PDF | Supplemental material
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Figure 2
Mass spectrometry analysis of unique eluted masses.

MS/MS analysis of the unique masses using collision-induced dissociation (CID) reveals their identity. Plots show fragmentation patterns of the 784.37 m/z (A) and 968.48 m/z (B) species under CID in atmospheric gas, revealing a series of ions (y, b, and a) and fragments (PD/DP, GPD, and GPDPA) that identify the parent ions as WGPDPAAA (PPI17–24, predicted monoisotopic mass, 784.3624 Da) and ALWGPDPAAA (PPI15–24, predicted monoisotopic mass, 968.4836 Da), respectively. These sequences map to the SP of PPI. These results, from the starting cellular material onward, were replicated in a further 2 independent experiments. (C) Representation of the SP region of PPI and beginning of the B chain of insulin. Both eluted peptides terminate at residue 24, the signal peptidase cleavage site. The transmembrane region of SP is shown, as predicted from SignalP-HMM (51) and Kyte-Doolittle (52) hydrophobicity plots, and indicates that residue 17 is immediately after the transmembrane segment, while the NH2 terminus of PPI15–24 commences in the intramembrane segment.