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Nichole R. Klatt, Francois Villinger, Pavel Bostik, Shari N. Gordon, Lara Pereira, Jessica C. Engram, Ann Mayne, Richard M. Dunham, Benton Lawson, Sarah J. Ratcliffe, Donald L. Sodora, James Else, Keith Reimann, Silvija I. Staprans, Ashley T. Haase, Jacob D. Estes, Guido Silvestri, Aftab A. Ansari
Published in Volume 118, Issue 6
J Clin Invest. 2008; 118(6):2039–2049 doi:10.1172/JCI33814
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Figure 6
Analysis of TCR repertoire diversity via TCR V-J fragment–specific Southern hybridization.

TCR V-J PCR amplicons were generated from 3 aliquots of CD4+ T cells from each PBMC sample designated as control, 1, and 2 and hybridized with a probe generated from the control aliquot. The 1.0 signal obtained from the positive control indicates 100% homology between the probe and target; ratios from aliquots 1 and 2 indicate less homology between the probe and the amplicon and indicate the level of variability of V-J region sequences. There was no significant difference in the variability of the CD4+ T cell V-J fragment before and after CD4+ T cell depletion.