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Carine Blanchard, Ning Wang, Keith F. Stringer, Anil Mishra, Patricia C. Fulkerson, J. Pablo Abonia, Sean C. Jameson, Cassie Kirby, Michael R. Konikoff, Margaret H. Collins, Mitchell B. Cohen, Rachel Akers, Simon P. Hogan, Amal H. Assa’ad, Philip E. Putnam, Bruce J. Aronow, Marc E. Rothenberg
Published in Volume 116, Issue 2
J Clin Invest. 2006; 116(2):536–547 doi:10.1172/JCI26679
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Figure 1

Microarray analysis of the transcripts expressed in esophageal biopsies. RNA from each patient was subjected to chip analysis using Affymetrix Human Genome U133 Plus 2.0 GeneChips. The normal (NL) group is composed of 6 individuals (numbers 1–6), the CE group is represented by 5 patients (numbers 7–11), and 13 patients (numbers 12–24) are in the EE group, as reported in Supplemental Table 1. (A) The 574 genes differentially expressed (P < 0.01) in the EE group compared with normal healthy patients have been ordered (standard correlation); upregulated genes are represented in red and downregulated genes in blue. The magnitude of the gene changes is proportional to the darkness of the color. Each column represents a separate individual and each line a gene. (B and C) EE transcript signature is presented as a function of the allergic status and sex of EE patients. Average expression of the transcripts of the EE signature is depicted in the non–allergen-sensitized (n = 4) and allergen-sensitized EE patients (n = 9) (B) and in female (n = 5) and male EE patients (n = 8) (C). (D) The 574 genes expressed significantly differently (P < 0.01) in the EE group compared with normal healthy patients and the 228 genes expressed differently (P < 0.01) in the CE group compared with normal healthy patients have been analyzed by cluster analysis and ordered (distance) using GeneSpring software. Clusters 1, 2, and 3 highlight the CE transcripts, and clusters 4 and 5 highlight the EE transcripts. The eosinophil (Eos) count in each patient is shown in the lower panel.